Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04466 ATGTTGAGAACACAATCATCACTTCTACAAATTCCACCACCCACCTATGGAAACTTGGTGACTATTCTAAGCATAGATGGTGGCGGTATTAGGGGCATTATTCCCGCAACTATTCTCGAGTTCCTTGAATCGCAACTTCAAGAATTGGACGGTGAATCTGCAAGGCTTGCATATTACTTTGATGTGATTACAGGAACAAGTACAGGTGGTCTTGTAACCGCCATGTTAACTGCTCCAAATGATAAACAATGTCCTCTTTTTGCTGCCAAGGATATCAAACCATTTTACTTGGAACATTGTCCAAAGATTTTTCCACAATACAAGAGCTTGGGATCAGTGGGTAAATTGTTCAGATCATTAGCAGGACCAAAATACAATGGGAAATACCTTCACAGTGTGGTGAGGGAGATACTTGGAGAAACTAATCAACTTTTCCAGATAGCAGAGCTTCAGGTTTACACGTACTTGATGCACATATCTGTTCTTTACTCTATTGCAACAATGGATTGTGAGTTCTCACCGTCTTCTACCTCAATCGACAATTTTCTCACCGTCTTCTACCTCTTCACGTACGTCTTCAAGCTTCTCTTCATCTCAGTCTTCAAGCTTCATCTCAGTCTTCAATCACAATCGCTGATTCCGCGTGAGCTACGAAGGGGTGCTTTGCTTGCGTTTCTATTTCTGGTTGACTCTCTCGTGAAGCTTTCAGAAAAAAAATGA 720 0.4139 MLRTQSSLLQIPPPTYGNLVTILSIDGGGIRGIIPATILEFLESQLQELDGESARLAYYFDVITGTSTGGLVTAMLTAPNDKQCPLFAAKDIKPFYLEHCPKIFPQYKSLGSVGKLFRSLAGPKYNGKYLHSVVREILGETNQLFQIAELQVYTYLMHISVLYSIATMDCEFSPSSTSIDNFLTVFYLFTYVFKLLFISVFKLHLSLQSQSLIPRELRRGALLAFLFLVDSLVKLSEKK 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04466 239 Gene3D Cytosolic phospholipase A2 catalytic domain 13 185 - -
Trre5g04466 239 PANTHER XYLOSE ISOMERASE 10 142 - -
Trre5g04466 239 Pfam Patatin-like phospholipase 23 81 IPR002641 GO:0006629
Trre5g04466 239 SUPERFAMILY FabD/lysophospholipase-like 18 142 IPR016035 -
Trre5g04466 239 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 23 207 IPR002641 GO:0006629
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04466 Trre-Chr5 46631585 46639541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04466 13 141 Miscellaneous Gene Families AT2G26560 72.308 4.52e-60 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04466 - - gmx:100809159 236.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04466 5 46631585 46639541 Trre5g04466 5 46631585 46639541 ECH