Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04424 ATGCAATCCCTTCGCAGTGTTCAAAACAAAGAGGAATCGGGTTCATCATCGGCGAACCATGCAGCCACCCCCTTTCGCTCCCTCTCGACCCGCAACCGGACTAGTCGCACCTCCACATCAAACCGTCCGGTTCAACGATCCGCCTCTGCGAGATTGGCTCGTCAAAACACCTCACGCGAGGTGATGCTTAATGATATTGTTGGCAATGGAATCTCCGGTATTCTACATAAGTGGGTTAACTACGGCCGAGGGTGGCGGCCTCGTTGGTTCGTCCTCCACGATGGTGTTTTATCCTATTACAAAATTCATGGTCCTGATAAACTCATTCTCAACCGTGATGTTGAAAATCGATCTAAAGTTATTGGCGATGAGTCCCTCCGCCGTATCGCTAGCAACCGCAATTGTCCCTCCCGCAACCGCAAACCTGTTAGTGAAATCCACCTCACGGTGTGTTCTGTGCGTGAGAACAAAACAGATGAAAAGAGGTTTTGTATATGCACTGGTACAAAGAAGAGAATACATTTAAGAGCAGAAAGTAAAGAGGACAGAGCAATGTGGATGGAGGCAATGATGGCAGTGAAGAGCATGTATCCTAGATTACCAACAACTACAGATGTTTTGTCTCCTTCAGCTTCTGTAGTGATTTCCACTGACAAGTTAAGGCAAAGACTTTTGCAAGAGGATGTGAATGAGGTTTTAATTCGTGAATGTGAAGATATCATGAGAGCAGAGTTATTTCAGTTACATACTTATATTGTTGCCCTTAAGCAGAAACAATTGTTACTCACTGATACACTTCGTAATTTAGAGACAGAGAAGGTTGACTTGGAGAACACGCTTGTTGAAGACCAAAAACAATACAAGGATGAAGGAGATTCCTATCTATCGACACAAGAAGATAGTGATGGAAGTGGAAGTGAATATTCAGATGAGCAAAATAGGAATGATCAATCCGACGACGACGAGAGCGATGCATTCTTCGATACGTACGAGATTCTTTCATCAACGAGTAATGGATCATCTGATCAATGTGAAGAGACATCTAGTGCAACAGAAAAATCTGATTCAAAATCACCTAATGAATTTAACTATCCTTATATCAATAGAAGAAAGAAGTTGCCTGATCCTAGTGAGAAAGAAACTGGAATTAGTTTATGGTCAATAATAAAAGACAATATTGGAAAAGATCTTACAAAAGTTTGTCTTCCAGTTTATTTTAATGAACCAATCTCCTCATTGCAAAAATGTTTTGAAGATTTGGAATATTCTCACCTTCTAGATCATGCATATGAATGTGGTAAAAGGGGTGACAAGCTAATGAGGATACTCTACGTGGCTGCATTTGCAGTTTCAGGGTATGCTAACACTAGTGGTAGAAGTTGCAAACCATTTAATCCATTATTGGGTGAGACTTATGAGGCAGATTATCCAGATAAAGGCCTACGTTTTATCTCTGAGAAGGTGAGTCATCATCCTATGGTTGTAGCATGTCATTGTGAGGGCCGTGGTTGGAAATTTTGGGGTGATAGTATTTTAAAAAGTAAATTTTGGGGGCGTTCGATTCAACTTGATCCTATTGGAATTTTAACTGTGGAGTTTGATGATGGAGAAATCTTCTATTGGAGTAAGGTGACAACATCCATTTACAATCTCATTTTAGGAAAACTCTATTGTGATCATTATGGTACAATGAGAATAGAGGGGAATCGTGAGCATTCATGTAAGGTCAAATTCAAAGAGCAATCAATCATTGATAGAAATCCTCACCAGGTTCATGGCACAGTGGAAGATAAGAAGGGGAAAACAGCAGCTACTCTATTTGGAAAGTGGGATGATAGCTTGCATTACATAATTGGAGGACATTCTGGAAAAGGGAAAGGATCCAATTCATCAAAACCACATATGTTGTGGAAGAGAAACCAATTACCAGAGCAACAAACAAGATATAATCTTACAGAGTTTGCTCTTACACTGAATGAAATCACACCTGGTCTAAAGGAGAAGTTGCCACCAACTGATTCAAGGCTAAGGCCTGACCAAAGATGTTTGGAGAATGGACAATATGAAAGGGCCAATTCTGAAAAATTGCGGTTGGAACAAAGACAAAGACAGGCACGAAAGATGCAAGAGAAAGGTTGGAAACCAAGGTGGTTTGCCAAGGAAAAAGGCAGTAATAGTTATCGTTATGTTGGTGGATATTGGGAGACTAGAGAAAAGGGGAGTTGGGAATCTTGTCCTGACATTTTTGGCCAATTCTCAAATGATACTGATCAAGAATCTAAATTAAGTTCATAA 2295 0.4044 MQSLRSVQNKEESGSSSANHAATPFRSLSTRNRTSRTSTSNRPVQRSASARLARQNTSREVMLNDIVGNGISGILHKWVNYGRGWRPRWFVLHDGVLSYYKIHGPDKLILNRDVENRSKVIGDESLRRIASNRNCPSRNRKPVSEIHLTVCSVRENKTDEKRFCICTGTKKRIHLRAESKEDRAMWMEAMMAVKSMYPRLPTTTDVLSPSASVVISTDKLRQRLLQEDVNEVLIRECEDIMRAELFQLHTYIVALKQKQLLLTDTLRNLETEKVDLENTLVEDQKQYKDEGDSYLSTQEDSDGSGSEYSDEQNRNDQSDDDESDAFFDTYEILSSTSNGSSDQCEETSSATEKSDSKSPNEFNYPYINRRKKLPDPSEKETGISLWSIIKDNIGKDLTKVCLPVYFNEPISSLQKCFEDLEYSHLLDHAYECGKRGDKLMRILYVAAFAVSGYANTSGRSCKPFNPLLGETYEADYPDKGLRFISEKVSHHPMVVACHCEGRGWKFWGDSILKSKFWGRSIQLDPIGILTVEFDDGEIFYWSKVTTSIYNLILGKLYCDHYGTMRIEGNREHSCKVKFKEQSIIDRNPHQVHGTVEDKKGKTAATLFGKWDDSLHYIIGGHSGKGKGSNSSKPHMLWKRNQLPEQQTRYNLTEFALTLNEITPGLKEKLPPTDSRLRPDQRCLENGQYERANSEKLRLEQRQRQARKMQEKGWKPRWFAKEKGSNSYRYVGGYWETREKGSWESCPDIFGQFSNDTDQESKLSS 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04424 764 Coils Coil 266 286 - -
Trre5g04424 764 Gene3D - 470 652 - -
Trre5g04424 764 Pfam Oxysterol-binding protein 384 738 IPR000648 GO:0008289
Trre5g04424 764 SUPERFAMILY Oxysterol-binding protein-like 379 755 IPR037239 -
Trre5g04424 764 MobiDBLite consensus disorder prediction 329 363 - -
Trre5g04424 764 FunFam Oxysterol-binding protein-related protein 2A 680 751 - -
Trre5g04424 764 Pfam PH domain 71 192 IPR001849 -
Trre5g04424 764 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 70 737 IPR000648 GO:0008289
Trre5g04424 764 SMART PH_update 69 197 IPR001849 -
Trre5g04424 764 Gene3D - 69 197 IPR011993 -
Trre5g04424 764 Gene3D - 680 754 - -
Trre5g04424 764 ProSiteProfiles PH domain profile. 68 195 IPR001849 -
Trre5g04424 764 Coils Coil 688 711 - -
Trre5g04424 764 MobiDBLite consensus disorder prediction 1 55 - -
Trre5g04424 764 MobiDBLite consensus disorder prediction 283 378 - -
Trre5g04424 764 FunFam oxysterol-binding protein-related protein 1D isoform X1 470 641 - -
Trre5g04424 764 SUPERFAMILY PH domain-like 71 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04424 Trre-Chr5 46260330 46267063 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04424 K20456 - gmx:100781218 1111.67