Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre5g04408 | ATGTGGCACCGATTATCATCTTCAAACTTCAACCTCAGAACTTGTGGTTTAGGGTTAGGGTTTCTTAGTCGATCGTTCTCGTCTGAACCAGGGAAGAGGTTCGCTGCGTTATGGGGAAACGGCGATTACGGTAGATTGGGTCTTGGCGATTTGAATTCTCAATGGAAACCTGCTATTTGCACCTCCTTCCATAACCAAAACGTTAATTCCATTGCTTGTGGTGGTGCTCACACACTCTTCTTAACAGACAATGGATGTGTTTATGCTACTGGTCTCAATGATTTTGGACAGCTCGGTACATCGGAGAGTAAACAATACTCACTTGTGCCACTTCAAGTTTTTGGGCATGAGAAGAAAGTTGTGCACATATCTGCTGGTTATAATCATTCGAGTGCAATAACGGTGGATGGAGAACTATACATGTGGGGAAAGAATACAACTGGGCAGCTTGGACTTGGAAAAAGGGCTCCCAACATAGTTCCTTTGCCAACTAAAGTCGAATCCTTGGATGGAATCACCGTTAAAATGGCTGCTCTGGGTTCTGAGCACTCGGTGGCTATTAGTGATGAAGGAGAGGCATTTAGTTGGGGAACAGGAGTGTCTGGTAGACTTGGTCATGGCCATGAGTCAAGTATGTTAGGATTCTTCAAAAGTTACAGTGAATACACCCCAAGGCTTATAAAGGATCTTGAAGGAATCAAGGTAAAATATGTAGCTGCTGGGATGCTGACCTCGGCTTGTACTGATGAAAATGGTTCTGTGTTTATATTTGGAGAGAAAGGGATTGACAAATTGCTCTTGAAGGGGATGAGGAATGCAACAAAACCATCATTGATTAGTGAACTTCCATATGCTGAAGAAGTTGCTTGTGGTGGCTATCATACCTGTGTCTTGACAAATACTGGTGAGCTATATACTTGGGGTTCAAATGAAAATGGCTGCCTTGGCGTAGGGGCCTCATATGCCATTCATTCACCTGAAAAGGTTCAAGGGCCATTCTTGGAGTCTTGTGTTGTTCAGGTCTCTTGTGGTTGGAAGCATACAGCAGCCATTTCTGGGGGAAGAGTCTTCACATGGGGTTGGGGAGGTTCTAATGGAACTTTCTCTGATGATGGACATTCTTCAGGTGGACAATTGGGTCATGGAAGTGATGTGGATTTTATAAATCCTTCAAGAGTTTGCTTTGCAGAAGACGTGAAAGCATTGCAAGTTTCATGTGGTTTCAATCATACAGGTGCTATACTTGAGTATGCATAG | 1257 | 0.436 | MWHRLSSSNFNLRTCGLGLGFLSRSFSSEPGKRFAALWGNGDYGRLGLGDLNSQWKPAICTSFHNQNVNSIACGGAHTLFLTDNGCVYATGLNDFGQLGTSESKQYSLVPLQVFGHEKKVVHISAGYNHSSAITVDGELYMWGKNTTGQLGLGKRAPNIVPLPTKVESLDGITVKMAALGSEHSVAISDEGEAFSWGTGVSGRLGHGHESSMLGFFKSYSEYTPRLIKDLEGIKVKYVAAGMLTSACTDENGSVFIFGEKGIDKLLLKGMRNATKPSLISELPYAEEVACGGYHTCVLTNTGELYTWGSNENGCLGVGASYAIHSPEKVQGPFLESCVVQVSCGWKHTAAISGGRVFTWGWGGSNGTFSDDGHSSGGQLGHGSDVDFINPSRVCFAEDVKALQVSCGFNHTGAILEYA | 418 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre5g04408 | 418 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 137 | 190 | IPR000408 | - | |
| Trre5g04408 | 418 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 252 | 301 | IPR000408 | - | |
| Trre5g04408 | 418 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 302 | 351 | IPR000408 | - | |
| Trre5g04408 | 418 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 84 | 133 | IPR000408 | - | |
| Trre5g04408 | 418 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 190 | 241 | IPR000408 | - | |
| Trre5g04408 | 418 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 136 | 187 | IPR000408 | - | |
| Trre5g04408 | 418 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 372 | 414 | IPR000408 | - | |
| Trre5g04408 | 418 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 38 | 81 | IPR000408 | - | |
| Trre5g04408 | 418 | SUPERFAMILY | RCC1/BLIP-II | 37 | 415 | IPR009091 | - | |
| Trre5g04408 | 418 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 302 | 354 | IPR000408 | - | |
| Trre5g04408 | 418 | PRINTS | Chromosome condensation regulator RCC1 signature | 177 | 193 | IPR000408 | - | |
| Trre5g04408 | 418 | PRINTS | Chromosome condensation regulator RCC1 signature | 193 | 207 | IPR000408 | - | |
| Trre5g04408 | 418 | PRINTS | Chromosome condensation regulator RCC1 signature | 87 | 103 | IPR000408 | - | |
| Trre5g04408 | 418 | PRINTS | Chromosome condensation regulator RCC1 signature | 34 | 50 | IPR000408 | - | |
| Trre5g04408 | 418 | PRINTS | Chromosome condensation regulator RCC1 signature | 137 | 153 | IPR000408 | - | |
| Trre5g04408 | 418 | PRINTS | Chromosome condensation regulator RCC1 signature | 291 | 309 | IPR000408 | - | |
| Trre5g04408 | 418 | PRINTS | Chromosome condensation regulator RCC1 signature | 349 | 370 | IPR000408 | - | |
| Trre5g04408 | 418 | PRINTS | Chromosome condensation regulator RCC1 signature | 68 | 81 | IPR000408 | - | |
| Trre5g04408 | 418 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 117 | 415 | - | - | |
| Trre5g04408 | 418 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 191 | 251 | IPR000408 | - | |
| Trre5g04408 | 418 | Gene3D | - | 31 | 159 | IPR009091 | - | |
| Trre5g04408 | 418 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 85 | 136 | IPR000408 | - | |
| Trre5g04408 | 418 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 354 | 417 | IPR000408 | - | |
| Trre5g04408 | 418 | Gene3D | - | 160 | 417 | IPR009091 | - | |
| Trre5g04408 | 418 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 33 | 84 | IPR000408 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre5g04408 | Trre-Chr5 | 46122413 | 46130297 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre5g04408 | - | - | tpra:123917078 | 824.313 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Trre5g04408 | 5 | 46122413 | 46130297 | Trre5g04408 | 5 | 46122413 | 46130297 | ECH |