Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04331 ATGGAATCAGAGAAACCAACCTTCACAACCATCATTCTCGGATCATACAAAAAACCTTCATTCTCAATCTTACTTCTCTTCTTCACCTTCCTCACTATCTTCTCTCTTCAATTTTCCACTCGTTCTCTCTTCCCTCTTTCAATCCTCATTTCTCAACAACAATCATCCCTCGATCCCATCACCTGCTCCCATTTTTTTCACGATGTTCCTCCCAGAAAAGTTATCATGTCAATCGTTGATTTCGGTGGAGTTGGTGATGGTAAAACCTCCAATACGCAATCGTTTCAGAGAGCGATTCGGTACATGCAACGCTTTCAAAATAAAGGTGGATCACAGCTTAATATCCCCGCCGGAACGTGGCTTACCGGTAGTTTTAATCTCACCAGTGATTTCACGCTTTTTCTTCATCATGGTGCTGTTCTTCTCGGTTCTCAGGATCCAAAAGAATGGCCTATTATTGAACCTTTGCCATCTTATGGAAGGGGAAGAGAGAGGTTAGGAGGAAGACACATTAGCCTTATACATGCAAATGGTGTCCGTAATGTTGTTATCACAGGAGAAAATGGGACAGTTGATGGTCAAGGGAAGATGTGGTGGGAACTTTGGTGGAACAGAACATTGGTGCACACAAGAGGCCATCTCCTTGAACTCATGAACTCAGAAAATGTTCTAGTTTCAAACCTTACTTTTAAAAACTCTCCTTTTTGGACCATTCATCCTGTTTACTGCAGGAATGTTGTCATCAAAGGGATGACAATTTTGGCGCCTCTTAATGCCCCAAATACTGATGGCATAGACCCAGACTCAAGTACTAACGTGTGTATTGAAGATAACTACATAGAAAGTGGGGATGATCTCGTAGCCATCAAGAGTGGTTGGGATCAATATGGAATCACCATGGCTAAGCCCAGCACAAACATCATAGTGAGGAGAATTTCTGGCACTACCCCAACTTGTTCGGGAGTAGGAATAGGCAGTGAAATGTCTGGTGGAATTTCAAATATTATAATCGAGAATTTGCACGTGTGGAATTCTGCAGCTGGCGTTCGCATAAAATCTGATAATGGCAGAGGCGGGTATATAAAAAATGTGAGTATAAGCAATATAAGAATGGAGAGAGTGAAGATACCTATTAGGTTTAGTAGAGGTTCGAACGACCATCCTGATGATGGGTGGGATCCAAAAGCCGTTCCTAGATTTAATGATATTTTAATAAGCAATGTGGTCAGTGTAAATTCAACAAAATCTCCAGTTTTGGAAGGTGTGGAAGGTTCATCATTTGAAGGCTTGTGCTTCAAGAATATTACTCTTCTTGGTGTAGCCTTATCTGCAACATGGCATTGTGAATATGTTGCTGGTTTCACCAATGGGGTGTTCCCCGTTCCATGTCCCGAGTTGCAGAACAATGATCATGGATGGTTCAAAATTTTAGCTATGGTGAAAACCAGAACACTGGGTCATAATGTTGCTTCTCTGAGAAGTTTCTCGAGTCCTGCTCAAGCGGATTTTTTTGCTACGAGTGAAAAATGA 1530 0.417 MESEKPTFTTIILGSYKKPSFSILLLFFTFLTIFSLQFSTRSLFPLSILISQQQSSLDPITCSHFFHDVPPRKVIMSIVDFGGVGDGKTSNTQSFQRAIRYMQRFQNKGGSQLNIPAGTWLTGSFNLTSDFTLFLHHGAVLLGSQDPKEWPIIEPLPSYGRGRERLGGRHISLIHANGVRNVVITGENGTVDGQGKMWWELWWNRTLVHTRGHLLELMNSENVLVSNLTFKNSPFWTIHPVYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDNYIESGDDLVAIKSGWDQYGITMAKPSTNIIVRRISGTTPTCSGVGIGSEMSGGISNIIIENLHVWNSAAGVRIKSDNGRGGYIKNVSISNIRMERVKIPIRFSRGSNDHPDDGWDPKAVPRFNDILISNVVSVNSTKSPVLEGVEGSSFEGLCFKNITLLGVALSATWHCEYVAGFTNGVFPVPCPELQNNDHGWFKILAMVKTRTLGHNVASLRSFSSPAQADFFATSEK 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04331 509 Gene3D - 63 454 IPR012334 -
Trre5g04331 509 SUPERFAMILY Pectin lyase-like 67 468 IPR011050 -
Trre5g04331 509 SMART pbh1 332 353 IPR006626 -
Trre5g04331 509 SMART pbh1 361 382 IPR006626 -
Trre5g04331 509 SMART pbh1 270 302 IPR006626 -
Trre5g04331 509 SMART pbh1 243 269 IPR006626 -
Trre5g04331 509 SMART pbh1 304 326 IPR006626 -
Trre5g04331 509 Pfam Glycosyl hydrolases family 28 172 452 IPR000743 GO:0004650|GO:0005975
Trre5g04331 509 PANTHER PECTIN LYASE-RELATED 38 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04331 Trre-Chr5 45423279 45426332 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04331 1 466 Glycoside Hydrolase AT4G33440 68.094 0.0 653
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04331 - - gmx:100814190 788.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04331 5 45423279 45426332 Trre5g04331 5 45423279 45426332 ECH