Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04330 ATGAAGATCAAATCACATTCTTCATTTTGCTTCATATCCCTCATTGTAGCTTTTAGCAGCATACAAATATGCTTAGCAGACTGTGATAATATACAGGACACATGCCCCACATCACAAGAAAAACATACAACATCCATCAATGGTCTCACCTGTAATAACCCAGCTAACAAATCTGCTCATGATTTCAAAACCATGGAATTAAGCAAATCTGGTTCAAGAGACAAATTTGGTTCATCAATCAACATTGTGACAGCTTCAAAGTTCCCTGGCCTCTACACTCTTGGTATCTCAATTGGTAGAACAGACATTGAAGTGGATGGGATTGTGAACTTCCATAATCATCCAAGAGCTAGCGAGATGATCTTTGTTAAGGAAGGTGCATTGGAAGTTGGGTTTCTTGATACACAAAACAAGCTTTTCCAAAAGGCTTTGAAAGAAGGTGATGTGTTTGTGATCCCTAAGGGCTTGTTCCATTTCTTTCTAAACCGCGGTGTAGAAGTTACAAGTGTGTTTTCTGTGTTTAATAGCCAAAATCCAGGGTTGGGATCTCCTACAGCCACACCTTTTTCTGAATCAGTTGAGAAGGTAAAGAGGAAGCTTATATCACTTTCTGAGTTAGAAGTTGATAAGGTTGATGATTTAAGTTTGGCTGTGTCTGAGATTATTTATAATTAG 675 0.3822 MKIKSHSSFCFISLIVAFSSIQICLADCDNIQDTCPTSQEKHTTSINGLTCNNPANKSAHDFKTMELSKSGSRDKFGSSINIVTASKFPGLYTLGISIGRTDIEVDGIVNFHNHPRASEMIFVKEGALEVGFLDTQNKLFQKALKEGDVFVIPKGLFHFFLNRGVEVTSVFSVFNSQNPGLGSPTATPFSESVEKVKRKLISLSELEVDKVDDLSLAVSEIIYN 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04330 224 ProSitePatterns Germin family signature. 107 120 IPR019780 GO:0030145
Trre5g04330 224 SUPERFAMILY RmlC-like cupins 27 181 IPR011051 -
Trre5g04330 224 CDD cupin_OxOx 27 190 IPR001929 GO:0030145
Trre5g04330 224 Gene3D Jelly Rolls 26 215 IPR014710 -
Trre5g04330 224 FunFam germin-like protein subfamily 2 member 1 26 215 - -
Trre5g04330 224 PRINTS Germin signature 112 132 IPR001929 GO:0030145
Trre5g04330 224 PRINTS Germin signature 142 162 IPR001929 GO:0030145
Trre5g04330 224 PRINTS Germin signature 175 190 IPR001929 GO:0030145
Trre5g04330 224 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 24 191 - -
Trre5g04330 224 SMART Cupin_1_3 70 197 IPR006045 -
Trre5g04330 224 Pfam Cupin 75 185 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04330 Trre-Chr5 45421969 45422643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04330 12 180 Miscellaneous Gene Families AT3G05930 40.462 2.99e-33 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04330 - - mtr:112420373 342.043