Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04329 ATGGAATCGTCACAATCACAAAACAACAACAACAACAACAACAACCCCAATTCCAATCCTAATCCTCTTGCTTCATCGGTTCCGTTATGGCCAACGATCGATGGTCAATTAGGTTTATCGGAAGAAGAATCAGTGAAGTACGCTAGAAGATTCTACAAATTCGGTTTCGCACTTCTTCCTCTTCTTTGGGCTGTTAATTGCTTCTACTTCTGGCCTGTCATTCGCCATTCCCATTCCTTCCCTCGCATTCGACCCTATGTTGTTGGTTCTGCAATTGGGTTTACTATTTTTGCGGCGATTCTTTGTTCTTGGGCTCTTACATTTTCCATTGGAGGGGAACGCCTCTTTGGTCCTGTCTGGGATCAGTTGGTTATGTACAATCTCGCTGATAGGTTAGGCTTAATAGGCTGGAGCTAG 417 0.4412 MESSQSQNNNNNNNNPNSNPNPLASSVPLWPTIDGQLGLSEEESVKYARRFYKFGFALLPLLWAVNCFYFWPVIRHSHSFPRIRPYVVGSAIGFTIFAAILCSWALTFSIGGERLFGPVWDQLVMYNLADRLGLIGWS 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04329 138 PANTHER GAMMA-SECRETASE SUBUNIT PEN-2 8 138 IPR019379 -
Trre5g04329 138 MobiDBLite consensus disorder prediction 1 21 - -
Trre5g04329 138 Pfam Presenilin enhancer-2 subunit of gamma secretase 41 128 IPR019379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04329 Trre-Chr5 45419321 45420404 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04329 K06170 - gmx:106798930 229.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04329 5 45419321 45420404 Trre5g04329 5 45419321 45420404 ECH