Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04294 ATGGCTTCTAAGATCAACGTCTCACTATTTCTCCTCCTCTTCCTAGCACACTATGCAAATGTGAATGGAGATGCAACTTTGATCAAAAGCACTTGCAAGAACACCAAGTACTACAATCTATGTTTCTCTTCCCTCAAATCCAATCCTAGCAGTCCAAATGCAGACACAAAGGGCTTAGCTGTGATCATGGTTGGAATTGGAATGACAAATGCTACTTCCACTTCTTCATATTTGTCTTCTAAGTCTCTTACTCCTACCAACAACACCACCTTGAAAAGGGTTCTCAAAGAGTGTGCGGATAAGTACTCTTATGCTAGTGATTCACTTCAAGCTTCAGTGCAAGATTTGGCTAATGAAGAATATGATTATGCTTATATACACATCACTGCAGCCAAAGATTACCCAAATGCTTGTCATAATGCATTCAAAAGGGTTCCTGATTTAGTTTACCCTCATGAGCTTGCTAGTAGAGAAAATGGTTTGAAGCATATTTGTGATGTGGCTATGGGGATTATTGATAATCTCATCAATTTGTAG 537 0.3892 MASKINVSLFLLLFLAHYANVNGDATLIKSTCKNTKYYNLCFSSLKSNPSSPNADTKGLAVIMVGIGMTNATSTSSYLSSKSLTPTNNTTLKRVLKECADKYSYASDSLQASVQDLANEEYDYAYIHITAAKDYPNACHNAFKRVPDLVYPHELASRENGLKHICDVAMGIIDNLINL 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04294 178 PANTHER PECTINESTERASE INHIBITOR-LIKE 5 176 - -
Trre5g04294 178 Gene3D Invertase/pectin methylesterase inhibitor family protein 23 176 IPR035513 -
Trre5g04294 178 FunFam Cell wall / vacuolar inhibitor of fructosidase 2 23 175 - -
Trre5g04294 178 Pfam Plant invertase/pectin methylesterase inhibitor 27 170 IPR006501 GO:0004857
Trre5g04294 178 SMART PMEI_2 23 171 IPR006501 GO:0004857
Trre5g04294 178 NCBIfam pectinesterase inhibitor domain 5 175 IPR006501 GO:0004857
Trre5g04294 178 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 25 175 IPR035513 -
Trre5g04294 178 CDD PMEI_like 32 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04294 Trre-Chr5 45014739 45015275 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04294 - - gmx:100306461 278.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04294 5 45014739 45015275 Trre5g04294 5 45014739 45015275 ECH