Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04288 ATGCTCCTCTACTCTCCAGAAGTTTACAATACCAGCCATTTATCAGGCTCTGGCGCAAGGTGGATATGGGGTGGCTCAGATCCTCGGTACATTTCAAATATAGATACTGATTGGGATGATATAATGAAAATCACAGAGAAAATAATAGGAAAAAATGAATTTCAAGGCATCGGACTTGTAAATTTCAACAACACTGAGATTTCTAACTGGAAGCATAATTTTCACGATGCCACACATGTTGTTCTGCATCTGGAGCATGCTGCAAACAATGTGACATGGGAGTCTCTATATCCAGAATGGATTGATGAAGAAGAAGAAACCGAAGTTCCTGTTTGTCCTTCTCTACCAAGTCTTGTATCTCCTGGTACAAGACTCAATCTCATTGCTGTCAAGCTTCCTTGTAGGAATGGAGACAATTGGTCTAGAGATGTTGCTCGTTTGCACCTGCAGTTTGCAGCTGCTGGACTTGCTACCTCTTTCAAAGGAAATTACCCCGTTTATGTGCTCTTCATTACCAACTGTTTTCCGATACCAAATCTGTTTACCTGCAAAGAACTAATTGGACATGAAGGAAATGTATGGTTATACAGACCAAACTTGAGTGTTTTGAGAGAAAAGGTTCAGCTTCCAGTTGGCTCATGTGAACTTGCACTTCCTATGAGAGGCAAAGAACTGGTTTACAATGGAAATGTTCCAAGAGAAGCCTATGCAACAATTCTGCATTCAGCTCATGTTTATGTCTGTGGAGCCATAGCTGCAGCACAAAGCATCCGAATGTCAGGATCAAGTAGAGACCTTGTAATACTTGTTGATGAGACAATCAGTGAATATCACAAAAGTGGTTTGGAAGCGGCAGGGTGGAAGGTTAGAAAAATACAGAGGATCAGAAACCCCAAAGCTGAAAAAGATGCTTACAATGAATGGAACTACAGCAAATTCAGGTTATGGCAGCTGACAGATTATGACAAGATAATATTCATTGACGCGGATTTGCTCATACTCAGAAACATAGATTTTCTATTTGGAATGCCAGAAATCACTGCTACCGGTAACAATGCCACGCTTTTTAACTCAGGTGTCATGGTAGTGGAGCCATCAAACTGCACATTTCAACTACTGATGGATCATATTAATGAGATTGAGTCCTACAATGGAGGGGACCAAGGGTATTTGAATGAAATATTTACATGGTGGCACAGGATACCAAGACACATGAACTTCTTGAAGCATTTTTGGATTGGCGATGAGGAAGAGAAGAAGCAAATGAAAACCATGTTGTTTGGTGCTGAGCCACCAATTCTCTACGTGCTTCACTATCTAGGTTTGAAGCCATGGTTATGCTTCAGGGACTATGATTGTAACTGGAATGCTGATATATTTCACGAGTTTGCAAGTGATGTAGCACATGCAAAGTGGTGGAAGGTACATGATGCAATGCCTGAGCTTTTACAGCAGTTTTGCCTGTTGCAGTCAAAGCAGAAAGCACAGTTGGAGTGGGATCGGCGCCAAGCTGAAATAGCAAACTACACAGATGGGCATTGGCAAATCAAAGTTAAAGATCACCGCTTGAAGAAGTGTATAGATAATCTGTGTAACTGGAAAAGCATGTTGCGGCATTGGGGAGAGAGTAACTGGACAGATAATGAGTTTTTTACTCCAACACCTCCCACAGTTGCCACATCATCTCTTTCGGCTTTATGA 1701 0.4145 MLLYSPEVYNTSHLSGSGARWIWGGSDPRYISNIDTDWDDIMKITEKIIGKNEFQGIGLVNFNNTEISNWKHNFHDATHVVLHLEHAANNVTWESLYPEWIDEEEETEVPVCPSLPSLVSPGTRLNLIAVKLPCRNGDNWSRDVARLHLQFAAAGLATSFKGNYPVYVLFITNCFPIPNLFTCKELIGHEGNVWLYRPNLSVLREKVQLPVGSCELALPMRGKELVYNGNVPREAYATILHSAHVYVCGAIAAAQSIRMSGSSRDLVILVDETISEYHKSGLEAAGWKVRKIQRIRNPKAEKDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPEITATGNNATLFNSGVMVVEPSNCTFQLLMDHINEIESYNGGDQGYLNEIFTWWHRIPRHMNFLKHFWIGDEEEKKQMKTMLFGAEPPILYVLHYLGLKPWLCFRDYDCNWNADIFHEFASDVAHAKWWKVHDAMPELLQQFCLLQSKQKAQLEWDRRQAEIANYTDGHWQIKVKDHRLKKCIDNLCNWKSMLRHWGESNWTDNEFFTPTPPTVATSSLSAL 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04288 566 PANTHER GLYCOGENIN SUBFAMILY MEMBER 142 526 - -
Trre5g04288 566 FunFam Hexosyltransferase 231 483 - -
Trre5g04288 566 CDD GT8_Glycogenin 234 479 - -
Trre5g04288 566 SUPERFAMILY Nucleotide-diphospho-sugar transferases 233 479 IPR029044 -
Trre5g04288 566 Pfam Glycosyl transferase family 8 240 446 IPR002495 GO:0016757
Trre5g04288 566 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 231 481 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04288 Trre-Chr5 44900172 44902585 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04288 2 566 Glycosyltransferase AT3G18660 69.702 0.0 830
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04288 K20890 - gmx:100809361 1096.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04288 5 44900172 44902585 Trre5g04288 5 44900172 44902585 ECH