Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04286 ATGACGAAGTTCAGGAAGCTAGGTCGAGACACCGCTCACCGAATGTCCATGCTCAGAACCATGGTCTCGCAGTTGGTGAAGCATGAGCGTATCGAAACTACTGTTACCAAGGCTAAGGAGATTAGACGGCTTGCGGAAAATATGGTACAACTCGGTAAAGAGGGATCCGTATGCGCTGCAAGGCGTGCTGCTGGTTTCGTGCGAGGAGACGATGTCCTTCACAAGCTGTTTACAGAACTGGCTTATCGATACAAGGATAGAACAGGTGGATACACCAGGTTGCTTCGGACTCGTATTCGAGTTGGTGATGCTGCACCAATGGCCTATATCGAGTTCATTGATCGAGAAAATGAGCTTAGGCAATCAAAGCCACCAACTCCTCAACCACCACAGAAACAACCCCTTGATCCTTGGACCAAATCTCGTCTCTCCAGGCAGTATGCACCTCCCAAAGTGGAAAAATCCGATTCTGATTTGTGA 480 0.4875 MTKFRKLGRDTAHRMSMLRTMVSQLVKHERIETTVTKAKEIRRLAENMVQLGKEGSVCAARRAAGFVRGDDVLHKLFTELAYRYKDRTGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKPPTPQPPQKQPLDPWTKSRLSRQYAPPKVEKSDSDL 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04286 159 NCBIfam 50S ribosomal protein L17 4 114 IPR000456 GO:0003735|GO:0005840|GO:0006412
Trre5g04286 159 Hamap 50S ribosomal protein L17 [rplQ]. 2 113 IPR000456 GO:0003735|GO:0005840|GO:0006412
Trre5g04286 159 MobiDBLite consensus disorder prediction 116 159 - -
Trre5g04286 159 FunFam 50S ribosomal protein L17 1 113 - -
Trre5g04286 159 Pfam Ribosomal protein L17 17 113 IPR000456 GO:0003735|GO:0005840|GO:0006412
Trre5g04286 159 SUPERFAMILY Prokaryotic ribosomal protein L17 3 116 IPR036373 GO:0003735|GO:0005840|GO:0006412
Trre5g04286 159 PANTHER RIBOSOMAL PROTEIN L17 2 143 IPR000456 GO:0003735|GO:0005840|GO:0006412
Trre5g04286 159 Gene3D Ribosomal protein L17 1 113 IPR036373 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04286 Trre-Chr5 44890028 44893141 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04286 K02879 - mnt:21403614 269.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04286 5 44890028 44893141 Trre5g04286 5 44890028 44893141 ECH