Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04270 ATGGCGCCGGCGAAGAAGGGAAAATCAAAATCAGAGCCTAAGGAAACGGTTCCTTCGGTAAAACCTAATGATTTTCCGTCTTGTATTCGGTGTGTGGCTCCTTTTTCCGTTGCTATAACGATCCACGCTAAACCCGGTTCAAAGTCTGCTTCCGTAACAGATGTGAGCGATGAAGCTGTTGGTGTTCAGATTGATGCACCGGCGAGGGATGGTGAAGCAAATGCTGCTCTTCTTGATTATATCAGCTCTGTTTTAGGCGTAAAACGAAGACAAGTGTCTTTAGGTACCGGTTCTAAGTCAAGAGATAAGACGGTCATTGTGGAAGATGTAACTCAGCAATATGTTTTTGACGCTCTGGATAAAGTCTCAAAACAGTAG 378 0.4444 MAPAKKGKSKSEPKETVPSVKPNDFPSCIRCVAPFSVAITIHAKPGSKSASVTDVSDEAVGVQIDAPARDGEANAALLDYISSVLGVKRRQVSLGTGSKSRDKTVIVEDVTQQYVFDALDKVSKQ 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04270 125 PANTHER OS04G0686300 PROTEIN 1 124 - -
Trre5g04270 125 SUPERFAMILY YggU-like 32 114 IPR036591 -
Trre5g04270 125 Hamap UPF0235 protein YggU [yggU]. 33 121 IPR003746 -
Trre5g04270 125 Gene3D - 31 124 IPR036591 -
Trre5g04270 125 Pfam Uncharacterised ACR, YggU family COG1872 37 108 IPR003746 -
Trre5g04270 125 SMART DUF167_2 33 109 IPR003746 -
Trre5g04270 125 NCBIfam DUF167 family protein 38 106 IPR003746 -
Trre5g04270 125 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04270 Trre-Chr5 44656619 44657840 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04270 K09131 - gmx:100527290 223.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04270 5 44656619 44657840 Trre5g04270 5 44656619 44657840 ECH