Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04269 ATGGGAGCGTCAACTTCATCGGAGCCGAAGGTTTCACCGGAACAACAGGAAGCGGAAAACGTCGCATCTTCCACCGGAGCTCTTCCAATACTTCAAAAAGCATTCTCCAAGTTCGCTAACTCCGAAACAAACGCAATTCCCTTAGAAAATCTTCAAAAATGCTTCAGTTTCGTTCGCGAAGGTGGAAGTTACACTACCGAGAACGTGAATGATTCGTTTCCGGTATTATTGGATCAATTAGGTTCATCATTAGTTGATCAATTTTTCATTTCTGATAAAGATGGAATAAACTGGGTAGAATTTGTGAAAGGTTATAACAAGTGTTGTTCTAGGGTATCGGCATCGATTTTTCTGAATAAGTTTATTAGAGTGTTCATTGATGTTACTAAAAAAGCAAATTTATCTCTGAATTTGGAGTTTGAATCAGATGATGTTGATTGTAAGGTCAATGGTTATCTTCTTCCTAATCATGTGTTTCTGTTACTTTCCATTTGTTGGGCTATGTCTTGGGATTGTAGAAATTTGAATGGGAAAGGGAAAGGAAATTTGAGTGTACCAGATTTGAATCATTTGGTGTTATCGGCGATTACTTCGTGTGTTGAAGATAAAGATGCGTTTGATGTGTGGGATTGTGAGGTTTTGAGTTTGGAAGTTCAGCTTCCTGTAGGGAAGTTTGTGACATGGGTTATGAGTACAGTGCCATGTCTCCCTGATTGCTTAAAGCAGTATTTTCATTCAAGATTGCAAATTGCAGTAACTGAAGTGGAAGAATTGGCATCCTCTGATGCCTCTTCTGTTGGAGAAATTTCATCTACTACTACATGCGATTCTATTTTAACCCAAGGAAGGGCGTGGGCAATTTCTATCACACAGAGAAGTACAATAAATGAAGAGATTTCTAGAGCCTTTATTAGCAGTGGAGCTGGTATTGATGAGAACCTTATTTATCGTTCATCCACCCATGGAAGGGGCCTCAACAGATTTTGGTCTCATGTTGAAGGTTATCACGGCCCATTGCTAATTTTGATTGCCGCAAGTTCAGGAAATGATCACGAAGGAAATTCCGCAATCAGGAAATTTATTTTAGGTGCCCTAACAAATGAAGGTCTTGAAAATAAAGATATCTTCTATGGAACCACCGGTTGTTTATATTCTTTAAGCCCAGTGTTTCATGTATTTCCACCTTCTGGTAAGGAAAAAAATTTCGTTTATAGCCACTTGCATCCTACTGGCAGAGGATACCAATCACATCCAGCGCCAGTTGGAGTTGCATTTGGAGGAAGTGCGGGAAATGAGAGAATATTTATTGATGAAGATTTTTCAAAAGTGACCGTTCGCCACCATGCTGTTGACAAAACTTACCAGAGTGGTGCCCTCTTTCCAGATCAGGGTTTCCTACCTACTGAAGCTCTCATTTCAGAAGTTGAAGTTTGGGGACTTGGTGGGAAAGCAGCATTGGATGTTCAAAACAAATATAAGAAGAGAGAAGAACTTTTCACTGATCAAAGACGAAAAATTGACCTGAAGACATTTGCAAATTGGGAGGATTCACCTGAGAAAATGATGATGGATATGATGTCTGATCCAAATGCTGCTCGAAGGGAAGAGCGTTGA 1614 0.3971 MGASTSSEPKVSPEQQEAENVASSTGALPILQKAFSKFANSETNAIPLENLQKCFSFVREGGSYTTENVNDSFPVLLDQLGSSLVDQFFISDKDGINWVEFVKGYNKCCSRVSASIFLNKFIRVFIDVTKKANLSLNLEFESDDVDCKVNGYLLPNHVFLLLSICWAMSWDCRNLNGKGKGNLSVPDLNHLVLSAITSCVEDKDAFDVWDCEVLSLEVQLPVGKFVTWVMSTVPCLPDCLKQYFHSRLQIAVTEVEELASSDASSVGEISSTTTCDSILTQGRAWAISITQRSTINEEISRAFISSGAGIDENLIYRSSTHGRGLNRFWSHVEGYHGPLLILIAASSGNDHEGNSAIRKFILGALTNEGLENKDIFYGTTGCLYSLSPVFHVFPPSGKEKNFVYSHLHPTGRGYQSHPAPVGVAFGGSAGNERIFIDEDFSKVTVRHHAVDKTYQSGALFPDQGFLPTEALISEVEVWGLGGKAALDVQNKYKKREELFTDQRRKIDLKTFANWEDSPEKMMMDMMSDPNAARREER 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04269 537 ProSiteProfiles TLDc domain profile. 285 481 IPR006571 -
Trre5g04269 537 Pfam TLD 314 481 IPR006571 -
Trre5g04269 537 MobiDBLite consensus disorder prediction 1 23 - -
Trre5g04269 537 PANTHER NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED 52 480 - -
Trre5g04269 537 SMART 109ultra 292 481 IPR006571 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04269 Trre-Chr5 44652989 44656285 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04269 310 442 EF-hand Containing Proteins AT5G06260 25.735 4.87e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04269 - - gmx:100786867 843.573