Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04260 ATGACGACAAAAGCTTTGTCCTTCACCCTATCTCTCAACGACCTATTTGGTTCCAAGTCTCCACAAACCGCTTCAAAAGTTTCTGTTTTCTCTGTCAGATGTTCCGCCGGTAATGGAGAAAGGCCATGGAAGAATTCGGATGCTAGACTTGTGCTAGAAGATGGTTCGATTTGGAAAGCTAAATCATTTGGTGCTTCAGGAACCCAAGTCGGTGAAGTTGTTTTCAATACATCATTGACTGGGTATCAAGAAATTTTAACCGATCCTAGTTATGCTGGACAGTTTGTTCTGATGACAAATCCGCATATTGGGAATACTGGCATTAATTTTGATGACGAGGAATCAGCACAGTGCTTCCTTTCCGGACTAGTAATTAGAAGTTTGAGTATCAGTACCTCAAACTGGAGATGTGAGAAAGATCTAGGCGATTACTTAGCAGAAAGGAATGTCATGGGAATTTATGATGTTGATACACGGGCAATCACACGCAGATTACGAGAAGATGGCAGCCTTGTTGGTGTTTTGAGCACCGACAATTCCAAAACAGATGAGGAATTACTTCAGATGTCTAAATCGTGGGATATTGTTGGTATTGATCTAATTAGTGGAGTATCTTGCAAGTCTCCATATGAATGGGTTGATAGAACAAAGGACGAATGGGAGTTTAGTTCCAGTGAAGGGCCTAAAGACACTTTCCATGTAGTTGCTTACGATTTTGGAATCAAGCATAATATACTTAGGCGCCTAGCATCTTATGGCTGTAAAATCACTGTTGTGCCATCTACATGGCCAGCATCTGAAACTTTGAAGTTAAATCCAGATGGCGTGCTTTTCAGCAATGGCCCTGGAGATCCATCTGCTGTTCCTTATGCCGTTGAAACCGTAAAGAATATTATCGGAAAGGTGCCTGTTTTTGGAATTTGTATGGGGCATCAATTGCTAGGCCAGGCTTTAGGAGGTACAACCTACAAGATGAAATTTGGTCACCATGGAGGAAATCATCCTGTTCGTAACCTTCGAACCGGCCGTGTTGAAATCAGTTCTCAGAACCACAACTATGCGGTTGACCCTGCCACACTGCCCGAAGGAGTGGAGGTTACTCATATCAATCTTAACGACAGCAGTTGTGCTGGTCTTGCTTTCCCTGCTCGTAAGATCGTGTCTCTTCAATACCACCCTGAAGCATCCCCTGGACCTCATGATTCTGACAACGCTTTTAGGGAGTTTATAGAGCTCATGAAGCATGAAAAAAACACAACATCGAATGAAAACCTACACCTACTACAATCGGTGTAA 1296 0.4282 MTTKALSFTLSLNDLFGSKSPQTASKVSVFSVRCSAGNGERPWKNSDARLVLEDGSIWKAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGINFDDEESAQCFLSGLVIRSLSISTSNWRCEKDLGDYLAERNVMGIYDVDTRAITRRLREDGSLVGVLSTDNSKTDEELLQMSKSWDIVGIDLISGVSCKSPYEWVDRTKDEWEFSSSEGPKDTFHVVAYDFGIKHNILRRLASYGCKITVVPSTWPASETLKLNPDGVLFSNGPGDPSAVPYAVETVKNIIGKVPVFGICMGHQLLGQALGGTTYKMKFGHHGGNHPVRNLRTGRVEISSQNHNYAVDPATLPEGVEVTHINLNDSSCAGLAFPARKIVSLQYHPEASPGPHDSDNAFREFIELMKHEKNTTSNENLHLLQSV 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04260 431 Pfam Glutamine amidotransferase class-I 237 411 IPR017926 -
Trre5g04260 431 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 233 419 - -
Trre5g04260 431 Gene3D - 195 417 IPR029062 -
Trre5g04260 431 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 273 287 - -
Trre5g04260 431 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 345 356 - -
Trre5g04260 431 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 303 319 - -
Trre5g04260 431 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 234 248 - -
Trre5g04260 431 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 320 337 - -
Trre5g04260 431 PANTHER CARBAMOYLTRANSFERASE FAMILY MEMBER 44 412 - -
Trre5g04260 431 FunFam Carbamoyl-phosphate synthase small chain 45 194 - -
Trre5g04260 431 SUPERFAMILY Class I glutamine amidotransferase-like 199 416 IPR029062 -
Trre5g04260 431 NCBIfam glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 48 414 IPR006274 GO:0004088|GO:0006207|GO:0006541
Trre5g04260 431 SUPERFAMILY Carbamoyl phosphate synthetase, small subunit N-terminal domain 47 191 IPR036480 -
Trre5g04260 431 PRINTS Glutamine amidotransferase superfamily signature 303 314 - -
Trre5g04260 431 PRINTS Glutamine amidotransferase superfamily signature 388 401 - -
Trre5g04260 431 PRINTS Glutamine amidotransferase superfamily signature 276 285 - -
Trre5g04260 431 SMART CPSase_sm_chain_2 46 176 IPR002474 -
Trre5g04260 431 PRINTS Anthranilate synthase component II signature 276 285 - -
Trre5g04260 431 PRINTS Anthranilate synthase component II signature 388 401 - -
Trre5g04260 431 PRINTS Anthranilate synthase component II signature 303 314 - -
Trre5g04260 431 Hamap Carbamoyl-phosphate synthase small chain [carA]. 46 417 IPR006274 GO:0004088|GO:0006207|GO:0006541
Trre5g04260 431 Gene3D - 46 194 IPR036480 -
Trre5g04260 431 CDD GATase1_CPSase 234 410 IPR035686 -
Trre5g04260 431 FunFam carbamoyl-phosphate synthase small chain, chloroplastic 195 417 - -
Trre5g04260 431 Pfam Carbamoyl-phosphate synthase small chain, CPSase domain 50 174 IPR002474 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04260 Trre-Chr5 44519198 44522247 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04260 K01956 - gmx:100806168 756.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04260 5 44519198 44522247 Trre5g04260 5 44519198 44522247 ECH