Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04206 ATGGCTAGAGGCCCAATTTCGTCACTTTTCTACTTATGCACACGAAAAAAAAGATATTTTTCAAGATTTAAAGCTCTACTTATCAATCAATCGTTGATTTCATCTTCAAATTCTCAATTTTATGACCCTTTTCGCCCATTTTCGACCCATTTGATGAATCCTGGTTTGTCTCAAAGTTTGAATCTATCTGGCTGTAGAAATCTTCCCATGAGACCCTTTTCGACAGACGGCGAGGAGTGTGGTGAAACCGGTTTGCATTCAGAACTCAAAAAGGGTGTTGGTGAAAATGTTGATTTTGAGCTTGGTAATGAGGTTAGTGATGATTTTTATGCTTTATCTGGAAATGGGGTTGTTTTAGATAATGGCAATGATGAATGCAATTCAGAGATTGTTGATTCCGTAGAATGTAGTTATAGTAATAGCAGTAGTGGTAGTAGTAGTGATAATGATGAATTAGAGAAGAAGAGTGAGATTGATTTTAGGCATGTGGCGTCGCGTGATCCTATTGAATTGTACGGTGAGCTTAAGAGTGTGGAAAGGGGTGCAAGGTTGATTAGAGCTGAGGTGGAAGTGTTGCAAGATATGTTCCATTATTTTGCTAAATCACATTGGGCTTCTGATCAGGCACTTGCTATTTACATTGGTTTGTCATTTTATCCAACTGCTGCACACAAATTTCAGAACTTTTTCAGGAAGAAATGTCCTGAAGATGTTGCTAGGTACTTGATTTCGCTTGGACCGTGTGATGAAGCTGTGAGATTTTTGTTTCCTTTATTTGTTGAGTTTTGTTTGGAGAATTTTACTGATGAGATCAACAAGTTTAGGCAAATGGTTAAGTCGGCAGACCTCACGAAACCTCACACTTGGTTTCCTTTTGCGAGGGCCATGAAACGGAAGATAATTTATCACTGTGGGCCTACCAATAGTGGTAAGACTTATAATGCTTTGCAGAGATTTATGGAGTCGAAGAAGGGTATTTATTGCAGTCCACTTAGATTGTTGGCTATGGAAGTTTTTGATAAGGTTAATGCCAAGGGTGTTTATTGTAGTTTGTTAACTGGTCAAGAGAAAAAGCATGTCCCGTTTTCAAATCATGTTGCGTGTACTGTGGAAATGGCTTCGACCCAGGAATTGTATGATGTGGCTATTGTTGATGAGATTCAGATGATGACAGATCCGTATAGAGGGTATGCATGGACTAGGGCACTCCTTGGTTTGATGGCCGATGAGATACACGTATGCGGTGATCCTAGTGTTTTGGATATTGTTCGAAAGATTTGTCAAGATACGGGAGATGAGTTGCATGAGAAACATTATGAGAGGTTCAAACCATTGGTGATTGAAGCAAAAACCCTGCTTGGAAATCTTGAAAATATTAAGTCTGGGGATTGTGTCGTTGCATTCTCAAGGAGAGAGATATTTGAGGTTAAGTTAGCCATCGAGAAACACACTAATCATAAATGCTGTGTGATATACGGAGCTTTGCCACCAGAGACTCGTAGGCAACAAGCTAATTTGTTCAATGATCCAAGTAACGAATATGACGTTCTAGTTGCTAGTGATGCAGTGGGGATGGGCCTGAACCTTAACATTCGAAGGGTGATTTTTAATAGCCTTTCGAAGTACAATGGTGACAAAATTCTTCCTGTTCCAGCATCACAGGTTAAGCAAATTGCAGGGAGGGCTGGTCGAAGAGGATGCCTTTATCCTGATGGACTCGCCACTACCTTGCATTTGGATGATTTGGATTACTTGATCGAGTGTTTGAAACAGCCCTTTGATCATGTGACGAGGGTTGGCCTTTTTCCTTCTTACGAGCAGGTCGAATTGTTTGCCGGACAACTTCCTAACATCACATTCAGCCAACTTTTAGAAAAATTCGGAGAAACTTGCCGTTTGGACGGATCGTACTTCTTGTGTCGGCATGATCATATAAAGAAAATCTCTAATATGTTAGAGAGGATTCAAGGGTTATCTTTAGAAGACCGGTTTAACTTCTGTTTTGCCCCTATTAATGTTAGGGACCCAAAAGCTATGTACCACTTGCTCAGATTCGCTACAGCGTTTGGTCAGAAGGTTCCTGTAAATATAGCTATGGGCATGCCGAAATGTTCGGCACGGAATGATACAGAACTTCTGGACCTTGAGAGTAGGCATCAAGTGTTATCTTCATATTTATGGTTATCAAACCACTTTGATGAGGAAAAATTTCCATATGCGCAGAAAGCTGAGGCCATGGCTTCAGACATTGCCATCTTACTTGGTGAATCACTCAGCAAAGCAAATTGGAAACCTGAGTCAAGGAACATAAGGAAACCAAAATCTGCAAAAAGTGAAGAGCCTCAAACAGAACCAAGAAGTGATATTCTAGAAACTGAAAAGAAGGATATTGGTTATTCAAGACCACAGTCTCTTATTAAATTATATGACCAGAAACGGAGTGAAAATTCGTCACACTCTAAGAAAATAATTTTCGCTGAGGCGCTTGATCTGGAAAAGACAGTGCTTCAGACAGTAGAGGAAGTTGCAGAGGACTGGAGGAGCGACGATATTAAAGGACTTCTTGGGCGTTGTAATTTTAAATCTGATATGCTTGATCGTAAAGTTTCTCTATTGAGTGGTGGTGAGAAGGCACGGCTGGCTTTCTGCAAATTCATGGTAAAACCATCAACTCTGCTTGTTTTGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTCGAGGAAGCAATAACAGCGTATGAGGGCACAGTCATCACAGTATCTCATGATCGGTACTTTATAAAGCAAATAGTTAGTAGAGTGATTGAAGTAAAAGATGGCGATTTACAGGATTATGCTGGGGATTATAATGCTTCTAACAAGTATGAATCTGAAAATTTGCAGTATTATTTAGAGAAGAATCTTGATGCTAGGGAAAGGGAGCTTGAACGCCAGGCAGAGCTTGAGGACAAAGCTCCTAAATTGAAAGCCAAATCTAAGATGTCCAAGGCTGAGAAAGAAGCAAGGAAGAAGCAAAAGATGCAGGCCTTTCAAGCAGGAAAACAGAAGTCCAAAAGTGCAAAAAACTCAAAGAGATGGAATTGA 3096 0.4018 MARGPISSLFYLCTRKKRYFSRFKALLINQSLISSSNSQFYDPFRPFSTHLMNPGLSQSLNLSGCRNLPMRPFSTDGEECGETGLHSELKKGVGENVDFELGNEVSDDFYALSGNGVVLDNGNDECNSEIVDSVECSYSNSSSGSSSDNDELEKKSEIDFRHVASRDPIELYGELKSVERGARLIRAEVEVLQDMFHYFAKSHWASDQALAIYIGLSFYPTAAHKFQNFFRKKCPEDVARYLISLGPCDEAVRFLFPLFVEFCLENFTDEINKFRQMVKSADLTKPHTWFPFARAMKRKIIYHCGPTNSGKTYNALQRFMESKKGIYCSPLRLLAMEVFDKVNAKGVYCSLLTGQEKKHVPFSNHVACTVEMASTQELYDVAIVDEIQMMTDPYRGYAWTRALLGLMADEIHVCGDPSVLDIVRKICQDTGDELHEKHYERFKPLVIEAKTLLGNLENIKSGDCVVAFSRREIFEVKLAIEKHTNHKCCVIYGALPPETRRQQANLFNDPSNEYDVLVASDAVGMGLNLNIRRVIFNSLSKYNGDKILPVPASQVKQIAGRAGRRGCLYPDGLATTLHLDDLDYLIECLKQPFDHVTRVGLFPSYEQVELFAGQLPNITFSQLLEKFGETCRLDGSYFLCRHDHIKKISNMLERIQGLSLEDRFNFCFAPINVRDPKAMYHLLRFATAFGQKVPVNIAMGMPKCSARNDTELLDLESRHQVLSSYLWLSNHFDEEKFPYAQKAEAMASDIAILLGESLSKANWKPESRNIRKPKSAKSEEPQTEPRSDILETEKKDIGYSRPQSLIKLYDQKRSENSSHSKKIIFAEALDLEKTVLQTVEEVAEDWRSDDIKGLLGRCNFKSDMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAITAYEGTVITVSHDRYFIKQIVSRVIEVKDGDLQDYAGDYNASNKYESENLQYYLEKNLDARERELERQAELEDKAPKLKAKSKMSKAEKEARKKQKMQAFQAGKQKSKSAKNSKRWN 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04206 1031 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 658 968 IPR003439 GO:0005524
Trre5g04206 1031 Pfam Mitochondrial degradasome RNA helicase subunit C terminal 712 759 IPR022192 GO:0016817
Trre5g04206 1031 ProSitePatterns ABC transporters family signature. 872 886 IPR017871 GO:0005524|GO:0016887
Trre5g04206 1031 MobiDBLite consensus disorder prediction 764 794 - -
Trre5g04206 1031 Gene3D - 286 440 IPR027417 -
Trre5g04206 1031 FunFam ATP-dependent RNA helicase SUV3L, mitochondrial 441 593 - -
Trre5g04206 1031 SMART helicmild6 472 566 IPR001650 -
Trre5g04206 1031 Pfam Helicase conserved C-terminal domain 456 566 IPR001650 -
Trre5g04206 1031 Pfam ABC transporter 799 900 IPR003439 GO:0005524
Trre5g04206 1031 CDD SF2_C_suv3 443 578 - -
Trre5g04206 1031 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 441 605 IPR001650 -
Trre5g04206 1031 MobiDBLite consensus disorder prediction 981 1031 - -
Trre5g04206 1031 Gene3D - 441 593 IPR027417 -
Trre5g04206 1031 FunFam ATP-dependent RNA helicase SUV3L, mitochondrial 590 667 - -
Trre5g04206 1031 CDD DEXQc_Suv3 298 439 IPR044774 GO:0003724|GO:0005524
Trre5g04206 1031 CDD ABCF_EF-3 869 944 - -
Trre5g04206 1031 Gene3D - 669 772 - -
Trre5g04206 1031 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 207 810 - -
Trre5g04206 1031 Gene3D - 280 667 - -
Trre5g04206 1031 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 292 408 IPR014001 -
Trre5g04206 1031 FunFam ATP-dependent RNA helicase SUPV3L1, mitochondrial 286 440 - -
Trre5g04206 1031 MobiDBLite consensus disorder prediction 765 794 - -
Trre5g04206 1031 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 298 567 IPR027417 -
Trre5g04206 1031 Gene3D - 779 1030 IPR027417 -
Trre5g04206 1031 MobiDBLite consensus disorder prediction 981 1011 - -
Trre5g04206 1031 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 815 946 IPR027417 -
Trre5g04206 1031 Pfam Suv3 C-terminal domain 1 648 689 IPR041082 -
Trre5g04206 1031 Coils Coil 975 1011 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04206 Trre-Chr5 43732891 43740167 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04206 K17675 - gmx:100777114 1199.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04206 5 43732891 43740167 Trre5g04206 5 43732891 43740167 ECH