Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04195 ATGAAGAATCAGAACTTGATTCCGTCTCTTCCAGAGGACGTCGCTGTAAATTGCCTCGCACGTGTCCCTCGCTCTCAACACACAACCCTCTCCCTCGTTTCCAAACCAATCCGTTCTCTCATATCTTCTCCACTCTTCTTCACCGCTCGCTCTCTCATTCACTCCACCCAACATATACTCTACCTCTCGCTTCGCACACGCGCCACCACTCTCCAATGGTTCACGCTCCACAACAACCACCGCCTCATTCCTCTACCTCCTCATCCTTCCCCCGCAATTGGCTCCTGTTACGCCGTCATCGGCCACACAATCTACATCATCGGCGGTTCAATCAACGATATTCCTTCCCGTCATGTCTGGATCCTCGATTGCCGCTTCCACCGCTGGCTTCCCGGTCCTTCCATGCGTGTCTCACGTGAATTCGCCGCTGCTGGCGTTATTGACGGCAAGATTTACGTAATCGGCGGTTGCGTTCCTGACAATTGGTCTAAATCAGCTAATTGGGCGGAGGTTTTCGATCCATCCACCAGCCGCTGGGAAAGCGTTCCTAGTCCGCCTGAGGTCCGTGAGAAGTGGATGCACGCCAGTGCCGTCATGGACGGAAAGGTTTACGCCATGGCTGATCGCGGTGGTGTTTCGCTCGATCCACGCAGTGGCACGTGGGAGAGCGTGGGGAACGAGCTTGACCTTGGATGGCGAGGGAGGGCTTGTGTTGTCAATGGAATCTTGTATTGCTATGATTACATGGGGAAAATCAAGGGTTTCGACGTGAAAAAAAGTTTATGGAAGGAATTAAAGGGTTTGGATAAGAGTTTGCCGAGGTTTCTTTGTGGAGCTACAATGGCTAATGTTGGTGGAAAATTGGTTGTGGTTTGGGAGTGCCAAGGGAATTTGAATGCCAAGGGGAAAGAAATTGAGGTTTGGTGTGCTGAGATTGCTGTGAATAAGAACAAGGATGGTGAATTGTGGGGTGAAGTTTGTTGGATAAAAAATGTTCTCTCTGTTACAAAAGGATCTTCCATTGTTCATTGTTCTTCTGTTGCCTTATGA 1050 0.501 MKNQNLIPSLPEDVAVNCLARVPRSQHTTLSLVSKPIRSLISSPLFFTARSLIHSTQHILYLSLRTRATTLQWFTLHNNHRLIPLPPHPSPAIGSCYAVIGHTIYIIGGSINDIPSRHVWILDCRFHRWLPGPSMRVSREFAAAGVIDGKIYVIGGCVPDNWSKSANWAEVFDPSTSRWESVPSPPEVREKWMHASAVMDGKVYAMADRGGVSLDPRSGTWESVGNELDLGWRGRACVVNGILYCYDYMGKIKGFDVKKSLWKELKGLDKSLPRFLCGATMANVGGKLVVVWECQGNLNAKGKEIEVWCAEIAVNKNKDGELWGEVCWIKNVLSVTKGSSIVHCSSVAL 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04195 349 Gene3D - 51 321 IPR015915 GO:0005515
Trre5g04195 349 SUPERFAMILY Kelch motif 77 330 IPR015915 GO:0005515
Trre5g04195 349 Pfam F-box domain 8 46 IPR001810 GO:0005515
Trre5g04195 349 Pfam Kelch motif 96 136 IPR006652 GO:0005515
Trre5g04195 349 Pfam Kelch motif 139 186 IPR006652 GO:0005515
Trre5g04195 349 CDD F-box_AtAFR-like 6 50 - -
Trre5g04195 349 SUPERFAMILY F-box domain 3 87 IPR036047 GO:0005515
Trre5g04195 349 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 6 333 - -
Trre5g04195 349 SMART kelc_smart 150 201 IPR006652 GO:0005515
Trre5g04195 349 SMART kelc_smart 103 149 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04195 Trre-Chr5 43659942 43660991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04195 10 333 Miscellaneous Gene Families AT4G33900 36.261 2.20e-56 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04195 - - aip:107604821 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04195 5 43659942 43660991 Trre5g04195 5 43659942 43660991 ECH