Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04194 ATGGCTTTGACTCTGAGTCTCAGCATCACAACAGTGTCTTCCCCACGATCGTCCATTCTCAAATTCAAGCCCAATTCATCACCACTTTCATTCCCACGCGCCTCTTCTTTTTCTACCTCTTCCTTAACTCAACTCACCGTCGGTGAAGATTTACCGCCAAATTACGGTGATTGGCTTCCCAAACCCCAACTTCACCTTCGTAGAAGAGCCGGCATTCTACTCCATCCGACGTCGTTTCAAGGTCCCTACGGAATCGGCGATCTCGGAAATCAGACCTTTCGTTTCATTGATTGGCTCCATCAAACCGGTTGCTCCCTTTGGCAGGTTCTTCCACTTGTGCCACCTGGCAGAAAGGCTAATGAAGAGGGATCTCCTTACTCGGGCCAGGATGCAAATTGTGGTAACACCCTTTTGATTTCTCTCGAAGAGCTTGTTGAGGATGGATTGTTGGAAAAACACGAGCTTCCCAAACCAATTGATGCAGAGCGCGTGAATTTTTCGGTTGTTGCTGATCTTAAGGATCCTTTGATAACTAAGGCTGCAGAGAGGCTCATTTCAAGCAGAGGGGAGCTCAAAACACAGCTTGAGAATTTTCGTAGGGATCCTAACATATCAAGTTGGCTTGAAGATGCTGCTTACTTCGCTGCTATTGATGACAGTTTGAACACACTCAGCTGGTATGATTGGCCTGAACCTTTAAAAAACCGTCATATTGTAGCTCTAGAAGATATTTACGAACAAAAGCGAGATTTTATAAATGTATTTATTGCCCAACAGTTCTTATTTCAAAGGCAATGGCAGAAAGTTCGCAACTATGCGCAGAGTAGGGGAATCAGCATAATGGGAGACATGCCCATTTATGTTGGCTATCATAGTGCAGATGTTTGGGCAAATAAGAACCAGTTTGCACTGAACAGGAAAGGCTTTCCTATTTTAGTGAGTGGCGTTCCTCCTGATGCATTCAGCGAAACTGGTCAACTTTGGGGAAGCCCCTTGTATGATTGGAAAGCCATGGAAAAAGAAGGATACTCATGGTGGATACGCCGCATACGACGTGCACAAGATATATATGACGAATTTAGGCTTGACCATTTTAGAGGATTGGCCGGATTTTGGGCTGTTCCCTCCGAAGCAAAAGTAGCTATGGTTGGAAAGTGGAAGGTAGGACCTGGAACATCCTTCTTTGATGCCATTTCCAGAGCTGTTGGAAGGATTAATATCACAGCAGAAGACTTGGGAGTTATCACTGAGGATGTAGTGCAACTAAGAAAATCCATTGGAGCCCCTGGAATGGCTGTCCTCCAGTTTGGGTTTGGAGGTGGTGCTGATAACCCTCATTTGCCGCATAATCACAAGTGCAATCAAGTTGTCTATACAGGGACTCATGACAATGACACAATTCAGGGTTGGTGGGAAGCTTTAACCAAGGAAGAGAAATCCCATGTATTGAGTTATATTTCATTAAACGGAGAAGATAATATTCCGTGGGCACTAATCCAGACAGCGCTGGCCTCTGTTGCTCAAACAGCAATAATACCTATGCAAGATGTTCTTGGACTCGGGAGTTCTGCCAGGATGAATATTCCTGCAACTCAGTTTGGAAACTGGGGATGGAGGGTTCCAAGTTCCGTGAGCTTTGACAGGTTAGAGAGAGAGGCAACCAGACTTAAAGAGTTGCTTTCAATGTATGGTCGGCTTTGA 1701 0.4509 MALTLSLSITTVSSPRSSILKFKPNSSPLSFPRASSFSTSSLTQLTVGEDLPPNYGDWLPKPQLHLRRRAGILLHPTSFQGPYGIGDLGNQTFRFIDWLHQTGCSLWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLEELVEDGLLEKHELPKPIDAERVNFSVVADLKDPLITKAAERLISSRGELKTQLENFRRDPNISSWLEDAAYFAAIDDSLNTLSWYDWPEPLKNRHIVALEDIYEQKRDFINVFIAQQFLFQRQWQKVRNYAQSRGISIMGDMPIYVGYHSADVWANKNQFALNRKGFPILVSGVPPDAFSETGQLWGSPLYDWKAMEKEGYSWWIRRIRRAQDIYDEFRLDHFRGLAGFWAVPSEAKVAMVGKWKVGPGTSFFDAISRAVGRINITAEDLGVITEDVVQLRKSIGAPGMAVLQFGFGGGADNPHLPHNHKCNQVVYTGTHDNDTIQGWWEALTKEEKSHVLSYISLNGEDNIPWALIQTALASVAQTAIIPMQDVLGLGSSARMNIPATQFGNWGWRVPSSVSFDRLEREATRLKELLSMYGRL 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04194 566 FunFam 4-alpha-glucanotransferase, chloroplastic/amyloplastic 65 566 - -
Trre5g04194 566 PANTHER 4-ALPHA-GLUCANOTRANSFERASE DPE1, CHLOROPLASTIC/AMYLOPLASTIC 39 566 IPR003385 GO:0004134|GO:0005975
Trre5g04194 566 Pfam 4-alpha-glucanotransferase 74 541 IPR003385 GO:0004134|GO:0005975
Trre5g04194 566 SUPERFAMILY (Trans)glycosidases 48 565 IPR017853 -
Trre5g04194 566 Gene3D Glycosidases 65 566 - -
Trre5g04194 566 Coils Coil 181 201 - -
Trre5g04194 566 NCBIfam 4-alpha-glucanotransferase 63 552 IPR003385 GO:0004134|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04194 Trre-Chr5 43653364 43659035 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04194 36 566 Glycoside Hydrolase AT5G64860 73.070 0.0 843
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04194 K00705 - gmx:100795007 981.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04194 5 43653364 43659035 Trre5g04194 5 43653364 43659035 ECH