Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04186 ATGGCTGAAGATAGTCCACGTCTTGGAGGGTTTTCAGCTGGTCTGGCTGTAATATTGAATGGTGAGGATAGTAAGAAAAATTTGCCGAAAACTCGCCTTCTTTCTTGCTGTGATGATTTAGGTGAACAGTCTGTGGAAAGAACGCTAGAATATGTGTTTGGTCTCCCCAACAGATCATTAAGTTCGTTGGATGGTCCGGTTGACAGCAGTTTTATTCGTTCTGTCATTAGGAATGTTTTTTCAAGATATAATGCAAATTCGGGTGATTCTTCTAGTGAAAAAGATATGATATGTAGACCAGATGTCGTAGGCTTAGAAGAATACAGCATATGCGGTGATATTAAAATCATCAAACCACCTTTTCTTATAGAGAGCTTGGAAATGTTCAGTAGTGTCAGGTCTAATACATGTGTTTGGAAAGGAAAATGGATGTATGAAGTTATGTTAGAAACATCTGGCATACAGCAGATTGGTTGGGCCACTAATTCTTGCCCTTTCACTGACCATAAAGGTGTTGGCGACGATGAGGATTCATATGCCTATGATGGGAGACGAGTTAGCAAGTGGAACAATGATGCTGAAACATATGGTCAGTCATGGGTTGTTGGTGATGTCATTGGATGTTGCATAGATTTGGAACGAGATGAAATAGTATTCTACAGGAATGGCAATTCACTTGGGGTGGCTTTCCAAGGTGTTCGGAAAATGGGTCCTGGTTTTGGTTATCATCCAGCAATCTCTCTCTCCCAGGGTGAAAGATGTGAATTGAACTTTGGGGCTCGACCCTTCAAGTACCCAATTGAAGGCTACCGTCCTCTTCAGGCTCCTCCCTCTAAGAGCTACTTTGTCACGCGATTGCTACAGTGCTGGTCAAGGCTGTTGGACATGCATTCAGTTGAACGAGCAGAACATTCTTTAGCTCAGAAATTGAGAAGAGCAAAGAGGTTTGTTTCATCCGAAGAAATATTTCGTCCTGTCTCTTATGCTATTTGTGAGGAATTATTCTGTATACTTGAAGAAGATGTTGGTCATGCAGAGCATATGGTTTGGGGTCCATTGTTGTCCTTCATGTTTGAAGTTTTTGAATTACATGCACCCCATGACTATTCAAGCTTGGATAAAGTAGTTGAAGTACTGCTACAATTTGAAGGATCACATGTGCTGTTTGAAAACATCATAAATGCGCTTTCATGTGGTTGTAAAGTGGCACAATTAGTTCTAACTGAATGTCCTTACTCTGGATCATATTCTTACCTTTCACTGGCATGTCATCTACTAAGACGAGAGGAACTTATGGTGCTTTGGTGGAAATCACCAGATTTTGATTTTTTGTTTGAAGGTTTTATGTCGCAAAAAACTCCAAACAAGCAGGATCTTGAGTCCATGATACCCACTGTTTGGTGGCCCGGTTCATGTGAAGATTCATGTTGTGAAAGTAACATGATGTTGGCAACCACAGCTTTGTCTGAATCAATCAGCAAGATTGAGGAGAAGCATCGGGATCTCTGTCGCTTAGTTATACAATTTATACCTCCCACAACACCTCCCCAATTACCTGGAGCAGTATTTAGGACGTTTTTACAAAACCTTCTACTGAAGAACAGAGGGGCAGAAAGAAATGTCCCACCACCTGGAGTTTCTAGCAATTCAGTTCTTGTTTCAACTTATACAGTTGTACTCCATTTTCTATCTGAAGGATTTGCCTTGGGTGATATCTGTGGCTGGTTAAAGAGCTACAAAGCAGATGTTGGTTTCCTTCATAGAGGCGGTCAACAAAGTTTTCCCATACACTTGTTTTTAAAAAATGATCCTCGTAGAACTGATATTTCCAGGCTTGGGGGATCCTATACCCATTTATCAAAGCTACACTCTGCTATTGATCATGAAAGGGAAGTAGTTCAATGGGATGAAGGTTGCATGGATAATGAAGAAATCAGAGTGACACATTCAACCAGGCAGAAGCCGTGCTGTTGTTCTAGTTATGATGCTGAATTTTCAAGGAATCTGAAGGTTCCAGCTAAATACCTGGCCAAAGGGTCTCGGGCCCACTGTAGCTCTATTCCAGAAAGACCTGCTCATGTTACTGCTGAATGCAGTGATGGGAGTTTGAATGATGAGATAACAGATAAACCCAGTTCCAGTGATCAATCTGAACCCGAGTATGGTTACCGCCAAGTGCACCATCTGAAATCTGTACCAAAGGATACTGATATGTTTATGGATACACTACAAGAAGAAGAGTTGCTCGATGCTTTGTTATGGCTGTATCAAGTTGGTCTTGCTCCAAATTTTAAGCAGGCATCATACTACATGACTCATCAGGTACAGTCAATCTCCATGTTGGAGGAAGTTGATAAGCAAATAAAGGAGCGGGCTTGTAGTGAAAAATTGAAGCATTTGAAAGAAACTCGTAATGAGTATAAAGAAGAGGTTATTGATTGTGTTAGGCATTGTGCTTGGTATCGTATCTCTCTGTTAGCTCGATGGAAGCAGCGAGGAATGTATGCAATGTGCATGTGGGTTGTCCAGTTGCTACTGGTTCTTAGCAATATGGATTCCGTGTTTATCTACACTCCTGAATATTATCTGGAAGCTTTGGTTGATTGCTTTCATGTGTTGCGGAAAAGTGATCCTCCATTTGTTCCGTCCACAATTTTGATCAAGCGTGGACTTGTTTCATTTGTCACTTTTGTAGTTACTCATTTCAATGATCCAAGGATATCAAGTGCGGATCTTAGGGATCTTCTTCTCCAGTCTATATCCGTCCTGGTGCAGTACAAGGAGTATTTGGCAATTTTTGAGAGCAACGAGGCAGCCAACCAAAGGTTGCCAAAAGCTTTATTATCAGCATTTGATAACAGATCTTGGATCCCGGTGACGAATATACTTCTGCGGTTATGCAAGGGTTCTGGTTTTAGTTTTTCAAAGAATGGGGAATCATCTTCATCATCAATTCTTTTCCAAAAGTTGCTAAAAGAAGCTTGCATAAATGATGAAGCATTATTTTCATCTTTTCTAAACCGTCTATTTAATACACTAAGCTGGGCCATGACAGAATTTTCAGTTTCTGTTCGAGAAATGCAAGAGAAGTACCAGGTAATGGAGTTTCAGCAAAGGAAATGTGGTGTTATATTTGATCTTTCATGTAATCTTGCAAGGATTTTGGAGTTCTGCACTCATGAGATTCCTCAAGCATTCCTGTCTGGACCAGAAACAAACCTAAGGAGATTAACCGAGTTGATTGTATTTATCTTGAATCATACTACTTCTTCAGCCGATGCAGAGTTCTTTGACTTGTCCCTTAGACGGCATAACCAATCTTCAGAGAAAGTAAATCGAGGCATGATATTGGCACCTCTCGTAGGGATCATGTTAAATTTATTGACTACTACTAAGTTGGTCGAGTATCAAGAGAACAATGATCTTGTGGATGTTTTTCTAAGCATGAATTGTGCAGAGACTGTTCTTTATGGTTTCCAATATCTTGTGGATTATAACTGGGATGGATCATGTCGGGGGGAAGCATACATGGGAAAGTATAAGGAGCTAGAAAATTTTCTGACCTTCCTTGCTTGCCGCACTATGTCTGAACATGATGAAGTGGACAGTGTTGTAGATACGACGGACCTGGATGATAACTTATGCTGCATATGTTACGCTTGTGAAGCAGATGCCCAGATTTCACCTTGTTCACATAGGTCTTGCTATGGCTGTGTAACTAGGCATCTTTTGAACTGTCAAAGATGTTTCTTTTGCAATGCTACAGTAACAAATGTTAGCAGAATTAACGAGAAGACAGGCTAA 3804 0.4064 MAEDSPRLGGFSAGLAVILNGEDSKKNLPKTRLLSCCDDLGEQSVERTLEYVFGLPNRSLSSLDGPVDSSFIRSVIRNVFSRYNANSGDSSSEKDMICRPDVVGLEEYSICGDIKIIKPPFLIESLEMFSSVRSNTCVWKGKWMYEVMLETSGIQQIGWATNSCPFTDHKGVGDDEDSYAYDGRRVSKWNNDAETYGQSWVVGDVIGCCIDLERDEIVFYRNGNSLGVAFQGVRKMGPGFGYHPAISLSQGERCELNFGARPFKYPIEGYRPLQAPPSKSYFVTRLLQCWSRLLDMHSVERAEHSLAQKLRRAKRFVSSEEIFRPVSYAICEELFCILEEDVGHAEHMVWGPLLSFMFEVFELHAPHDYSSLDKVVEVLLQFEGSHVLFENIINALSCGCKVAQLVLTECPYSGSYSYLSLACHLLRREELMVLWWKSPDFDFLFEGFMSQKTPNKQDLESMIPTVWWPGSCEDSCCESNMMLATTALSESISKIEEKHRDLCRLVIQFIPPTTPPQLPGAVFRTFLQNLLLKNRGAERNVPPPGVSSNSVLVSTYTVVLHFLSEGFALGDICGWLKSYKADVGFLHRGGQQSFPIHLFLKNDPRRTDISRLGGSYTHLSKLHSAIDHEREVVQWDEGCMDNEEIRVTHSTRQKPCCCSSYDAEFSRNLKVPAKYLAKGSRAHCSSIPERPAHVTAECSDGSLNDEITDKPSSSDQSEPEYGYRQVHHLKSVPKDTDMFMDTLQEEELLDALLWLYQVGLAPNFKQASYYMTHQVQSISMLEEVDKQIKERACSEKLKHLKETRNEYKEEVIDCVRHCAWYRISLLARWKQRGMYAMCMWVVQLLLVLSNMDSVFIYTPEYYLEALVDCFHVLRKSDPPFVPSTILIKRGLVSFVTFVVTHFNDPRISSADLRDLLLQSISVLVQYKEYLAIFESNEAANQRLPKALLSAFDNRSWIPVTNILLRLCKGSGFSFSKNGESSSSSILFQKLLKEACINDEALFSSFLNRLFNTLSWAMTEFSVSVREMQEKYQVMEFQQRKCGVIFDLSCNLARILEFCTHEIPQAFLSGPETNLRRLTELIVFILNHTTSSADAEFFDLSLRRHNQSSEKVNRGMILAPLVGIMLNLLTTTKLVEYQENNDLVDVFLSMNCAETVLYGFQYLVDYNWDGSCRGEAYMGKYKELENFLTFLACRTMSEHDEVDSVVDTTDLDDNLCCICYACEADAQISPCSHRSCYGCVTRHLLNCQRCFFCNATVTNVSRINEKTG 1267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04186 1267 MobiDBLite consensus disorder prediction 701 720 - -
Trre5g04186 1267 CDD SPRY_RNF123 131 259 IPR035773 -
Trre5g04186 1267 Gene3D - 118 289 IPR043136 -
Trre5g04186 1267 Pfam Ubiquitin elongating factor core 728 951 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Trre5g04186 1267 FunFam E3 ubiquitin-protein ligase RNF123 1206 1263 - -
Trre5g04186 1267 FunFam E3 ubiquitin-protein ligase RKP 112 286 - -
Trre5g04186 1267 SUPERFAMILY RING/U-box 1204 1258 - -
Trre5g04186 1267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1208 1264 IPR013083 -
Trre5g04186 1267 Pfam E3 ubiquitin-protein ligase RKP N-terminus 1 131 IPR045737 -
Trre5g04186 1267 SUPERFAMILY Concanavalin A-like lectins/glucanases 125 275 IPR013320 -
Trre5g04186 1267 MobiDBLite consensus disorder prediction 697 722 - -
Trre5g04186 1267 Pfam SPRY domain 142 260 IPR003877 GO:0005515
Trre5g04186 1267 ProSiteProfiles B30.2/SPRY domain profile. 76 263 IPR001870 -
Trre5g04186 1267 PANTHER RING FINGER AND SRY DOMAIN-CONTAINING 23 1265 IPR045129 GO:0004842
Trre5g04186 1267 SMART SPRY_3 140 262 IPR003877 GO:0005515
Trre5g04186 1267 CDD RING-HC_RNF123 1213 1256 - -
Trre5g04186 1267 Coils Coil 790 810 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04186 Trre-Chr5 43620858 43630380 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04186 K12169 - gmx:100800617 2223.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04186 5 43620858 43630380 Trre5g04186 5 43620858 43630380 ECH