Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04173 ATGTTGACCTTCTCCAAGTTCAAGAAAGCATTCTCTCCGATCCCATCTTCCTTCTGCGGCTTCCGCCGAACCGCCAACAATTCTCTCCGATCATTTTCCGTTGATTCCGACCAACAAGGTCTGCATTTCTGCATATGGGTTGCACTCAAATTCGATACTTTTACCTCTAAACCCTATAAATCGGTTAGTGGTATTCTTGCCCGTAACAATTGGCACTCTATTTACTGGGAAGCTCTTGAGCTTCTCAATAAAAAAGGGATTTTGTTAACTTCAGATTCCGTTAGAGCTTTGGTTAGGTCTTATTCTAATTTGGGTCAAACCAATAAAGCTATAGAAGCTTTCGGTAGAATGCGCGAATTCGGTGTTATTCCTGATGGTCATATGTATAACACAATTTTGAGAGATGTGTTGAGGAAACAGTTATTTGAGCTTGCTTTGGCATTGTATAATACTATGGTTAAATGCAGTTTTGACCTTGATGAATATACTTTTAACATGTTGATTGATGGGTTTTGTAAAAGTGGTAACATTAAGGGTGCATGTGAGATGGTTGAAGAAATGCAAAAGGCTAATCTTGTTCCTAGTGCTTTATCATATACCTCTGTTCTTCATGGTTTATGCCAGGTGAAAAATATGGATGAGGCACGTGAGCGGTTTAATGCGATGAAAGAAGATGGGTATTCGCCGGATGTTGTTTCTTGTAATGTTTTGCTTAATGGGTATTGTCAGCTGGGGAGGTTAGATGAAGCAGTTTCTTTTGTACGGTCGATGAAGAGAGATGGTTTCTCGCTTAATCGAAATGGCTATTGTTCTCTTATGAATGCATTTTTTAGAGCTAGGAGATATGGTGAAGCACATGCGTGGTATACAAGGATGTTTAAGGAGGGCATTGCACATGATGTTGTTACGTATACCATTATGATACGTGGTCTGTCGGATGAGGGCAGGGTTGGTGAAGCTGTTAGGATGTTAGATGAGATGAGTGAGATAGGTTTAACTCCTGATGCTCATTGCTACAATGCAATAATTAAAGGTTTATGTGATGCAGGTCTTTTTAATCGAGCGCAATCTCTTCGTCTTGAGATTTCTGAGGAAAATGTTTGCACGCACACGATTATCATATCTGAAATGTGTAAGAGAGGAATGATTGATGAAGCACAAGAATTATTTGACCAGATCGAGAAGCTTGGATTCGTTCCTTCAGTTGTGACCTTCAATGCGCTTATAAATGGACTGTGCAAAGCCCATAAACTCAAGGAGGCAATCCTTTTGTGTTCCAATGTGGAGATGAGGAGAACATATTGGTTATTCTTAAGGGGTCCTGATCTCCAGAAAAAGGTGCAGCAAATGTGTGAGGCCGGACAATTTTTGAATGCTTACGAGTTTCTCACTCTTATCAATAGTAGGGTTAAGCCTGACATTATTACATACAACATTCTAATCAATGCCTGTTGCAGGGCTCGTGAGATTAACTTTGCTAAGCGCCTTTTTAAGGAGCTGCAAAAGAATGGTCTGTCACCCGATTGTGTTACTTATGGGACACTTATTAACGGGCTGTACATAGTTGATCAAGAAGAGGAAGCCTTTAACATTTTTAACCGTATGCAGGAAGCTGGCTGTGAACCTACCCTTTCAGTTTATAGAACAGTTATGACTTGGTTGTGTAAAAAGAGCAAGGTCATGAAGGCATTTAATCTTTATTTGGAATATTTGAAGCGCCTCCCAAGTCGAGGCAATGATTCAATCAGTGCTCTAGAGGAATGTTTAGTCGAAGAAAAACTGGAACAAGTGATTCGAGGTTTACTTGAACTGGACTTCAAGGCCAGAGATTTTAAATTAGATCCATACACAATTCTACTTATTGGATTCTGTCTGGTAGAAAAAGTAGATGAAGCATTAATTATATTCTCAGTTCTTGACGAGTTCAATATCAAAATCAACGCTACAAGTTGCGTACATTTGATCAAAGGTCTTTGTAAGCAAAGTAAGCTATATGAAGCACGGAAAATATTTCTCTACAGTATTGACAAAGGTTTCATGTTGAGGCCAAAAATTTGTCACCACCTCCTCGGGCATCTTCTTGATTCCGAAAATTATAAGAAGTTGGCAGTTGATCTTATTATCAGGATGAAATCTTTTGGATACCATTTACCCCAATACCAAATAAGAAAGCAAATAAAAAATGTTCTCAGAAAAGATTAA 2202 0.3892 MLTFSKFKKAFSPIPSSFCGFRRTANNSLRSFSVDSDQQGLHFCIWVALKFDTFTSKPYKSVSGILARNNWHSIYWEALELLNKKGILLTSDSVRALVRSYSNLGQTNKAIEAFGRMREFGVIPDGHMYNTILRDVLRKQLFELALALYNTMVKCSFDLDEYTFNMLIDGFCKSGNIKGACEMVEEMQKANLVPSALSYTSVLHGLCQVKNMDEARERFNAMKEDGYSPDVVSCNVLLNGYCQLGRLDEAVSFVRSMKRDGFSLNRNGYCSLMNAFFRARRYGEAHAWYTRMFKEGIAHDVVTYTIMIRGLSDEGRVGEAVRMLDEMSEIGLTPDAHCYNAIIKGLCDAGLFNRAQSLRLEISEENVCTHTIIISEMCKRGMIDEAQELFDQIEKLGFVPSVVTFNALINGLCKAHKLKEAILLCSNVEMRRTYWLFLRGPDLQKKVQQMCEAGQFLNAYEFLTLINSRVKPDIITYNILINACCRAREINFAKRLFKELQKNGLSPDCVTYGTLINGLYIVDQEEEAFNIFNRMQEAGCEPTLSVYRTVMTWLCKKSKVMKAFNLYLEYLKRLPSRGNDSISALEECLVEEKLEQVIRGLLELDFKARDFKLDPYTILLIGFCLVEKVDEALIIFSVLDEFNIKINATSCVHLIKGLCKQSKLYEARKIFLYSIDKGFMLRPKICHHLLGHLLDSENYKKLAVDLIIRMKSFGYHLPQYQIRKQIKNVLRKD 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04173 733 Gene3D Tetratricopeptide repeat domain 218 290 IPR011990 GO:0005515
Trre5g04173 733 Gene3D Tetratricopeptide repeat domain 363 432 IPR011990 GO:0005515
Trre5g04173 733 Gene3D Tetratricopeptide repeat domain 291 362 IPR011990 GO:0005515
Trre5g04173 733 NCBIfam pentatricopeptide repeat 510 543 IPR002885 -
Trre5g04173 733 NCBIfam pentatricopeptide repeat 302 336 IPR002885 -
Trre5g04173 733 NCBIfam pentatricopeptide repeat 269 300 IPR002885 -
Trre5g04173 733 NCBIfam pentatricopeptide repeat 162 195 IPR002885 -
Trre5g04173 733 NCBIfam pentatricopeptide repeat 96 125 IPR002885 -
Trre5g04173 733 NCBIfam pentatricopeptide repeat 232 265 IPR002885 -
Trre5g04173 733 NCBIfam pentatricopeptide repeat 475 509 IPR002885 -
Trre5g04173 733 NCBIfam pentatricopeptide repeat 403 424 IPR002885 -
Trre5g04173 733 NCBIfam pentatricopeptide repeat 368 402 IPR002885 -
Trre5g04173 733 NCBIfam pentatricopeptide repeat 198 231 IPR002885 -
Trre5g04173 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 229 IPR002885 -
Trre5g04173 733 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 616 715 - -
Trre5g04173 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 90 124 IPR002885 -
Trre5g04173 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 160 194 IPR002885 -
Trre5g04173 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 264 IPR002885 -
Trre5g04173 733 Gene3D Tetratricopeptide repeat domain 605 733 IPR011990 GO:0005515
Trre5g04173 733 Gene3D Tetratricopeptide repeat domain 56 217 IPR011990 GO:0005515
Trre5g04173 733 SUPERFAMILY TPR-like 129 393 IPR011990 GO:0005515
Trre5g04173 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 508 542 IPR002885 -
Trre5g04173 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Trre5g04173 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 334 IPR002885 -
Trre5g04173 733 Pfam PPR repeat family 300 348 IPR002885 -
Trre5g04173 733 Pfam PPR repeat family 229 277 IPR002885 -
Trre5g04173 733 Pfam PPR repeat family 366 414 IPR002885 -
Trre5g04173 733 Pfam PPR repeat family 163 208 IPR002885 -
Trre5g04173 733 Pfam PPR repeat family 472 519 IPR002885 -
Trre5g04173 733 Gene3D Tetratricopeptide repeat domain 437 573 IPR011990 GO:0005515
Trre5g04173 733 Pfam PPR repeat 96 122 IPR002885 -
Trre5g04173 733 Pfam PPR repeat 653 678 IPR002885 -
Trre5g04173 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Trre5g04173 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 473 507 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04173 Trre-Chr5 43355498 43357699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04173 214 732 Glycosyltransferase AT1G05670 24.717 3.87e-36 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04173 - - lang:109340115 819.305