Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04169 ATGGCCGTTCGAACCCTATTGAGCAGAAAAACCCTATCCTCTCTCCTACGCAATGATCCAAAACCAATCGGAGCAGCAGCCATAACAGCAGCAGCAGCATCAACTCAATCCCGTGACTTGCATGTTTTCACGCTACCCGATCTCGCTTACGACTATGGCGCTTTGGAGCCTGTAATCAGCGGCGAAATCATGCAAATCCACCATCAGAAACATCATCAGACTTATATTACTAACTATAACAAAGCTCTTGAACAGCTTCATGATGCTGTCGGTAAAGCCGATGCATCAACCACCGTTAAGCTCCAGAATGCCATCAAGTTCAACGGCGGTGGTCACATCAACCATTCTATTTTCTGGAAAAATCTGGCTCCTGTTCGTGAAGGAGGTGGTGAACCACCAAAGGATTCCCTTGGATGGGCTATTGACACGCATTTTGGTTCTTTAGAAGCATTGATACAAAAGGTTAATGCTGAAGGTGCGGCCCTTCAAGGATCTGGATGGGTGTGGCTTGGTCTCGACAAAGAATTGAAGAGGCTTGTGGTTGAAACCACTGCAAACCAGGACCCACTGGTTACTAAAGGACCAAGTTTGGTTCCATTGCTTGGTATAGATGTTTGGGAGCATGCCTACTACTTGCAGTACAAGAATGTTAGACCAGACTATTTGAAGAACATCTGGAAAGTTATCAACTGGAAATATGCCAGTGAAGTGTATGAGAAAGAAAGCTCTTAG 732 0.4536 MAVRTLLSRKTLSSLLRNDPKPIGAAAITAAAASTQSRDLHVFTLPDLAYDYGALEPVISGEIMQIHHQKHHQTYITNYNKALEQLHDAVGKADASTTVKLQNAIKFNGGGHINHSIFWKNLAPVREGGGEPPKDSLGWAIDTHFGSLEALIQKVNAEGAALQGSGWVWLGLDKELKRLVVETTANQDPLVTKGPSLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKYASEVYEKESS 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04169 243 ProSitePatterns Manganese and iron superoxide dismutases signature. 204 211 IPR019833 GO:0004784|GO:0006801|GO:0046872
Trre5g04169 243 FunFam Superoxide dismutase 124 242 - -
Trre5g04169 243 PANTHER SUPEROXIDE DISMUTASE 2 34 241 - -
Trre5g04169 243 PRINTS Manganese superoxide dismutase signature 162 170 IPR001189 GO:0004784|GO:0006801|GO:0046872
Trre5g04169 243 PRINTS Manganese superoxide dismutase signature 202 214 IPR001189 GO:0004784|GO:0006801|GO:0046872
Trre5g04169 243 PRINTS Manganese superoxide dismutase signature 67 80 IPR001189 GO:0004784|GO:0006801|GO:0046872
Trre5g04169 243 PRINTS Manganese superoxide dismutase signature 106 119 IPR001189 GO:0004784|GO:0006801|GO:0046872
Trre5g04169 243 PRINTS Manganese superoxide dismutase signature 46 57 IPR001189 GO:0004784|GO:0006801|GO:0046872
Trre5g04169 243 Pfam Iron/manganese superoxide dismutases, C-terminal domain 133 235 IPR019832 GO:0004784|GO:0006801|GO:0046872
Trre5g04169 243 SUPERFAMILY Fe,Mn superoxide dismutase (SOD), C-terminal domain 128 240 IPR036314 -
Trre5g04169 243 Pfam Iron/manganese superoxide dismutases, alpha-hairpin domain 43 123 IPR019831 GO:0004784|GO:0006801|GO:0046872
Trre5g04169 243 FunFam Superoxide dismutase 60 123 - -
Trre5g04169 243 Gene3D - 124 243 IPR036314 -
Trre5g04169 243 SUPERFAMILY Fe,Mn superoxide dismutase (SOD), N-terminal domain 40 124 IPR036324 -
Trre5g04169 243 Gene3D Fe,Mn superoxide dismutase (SOD) domain 60 123 IPR036324 -
Trre5g04169 243 PIRSF MnSOD_FeSOD 19 243 IPR001189 GO:0004784|GO:0006801|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04169 Trre-Chr5 43323873 43327638 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04169 K04564 - gmx:100785490 431.409