LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre5g04167	ATGGATGAGGAGCTTTGGTTTATGGCTGAAGAGAGGGCTCAGGAAATACTATGCATAATTCAACCTAATGTTGTTTCTGAGGCGAACAGAAAGAAGGTTATTGATTTTGTTAAGAGGCTGATTGGAGGCTACTATGGGGGAGAGGTGTTCGTGTTTGGATCAGTCCCATTGAAAACCTATCTTCCAGATGGAGATATTGATTTGACAGTTCTCTGTCATGAAAGTGTAGAGGAGGATTTGCCACAGGCAGTATGCAATCTACTAGGAAGTGGAGAGGATCTTGAATATAAAGTAAAAGACATACAACACATCCGTGCGCAGGTTAAGGTTGTGAAATGCACAGTGAAAAATATAGCAGTTGATATATCTTTTAATCAGATGGCTGGACTCTATGCTCTGCACTTTCTGGAGCAGGTTGATGAACTTGTCGGGAAAAACCATGTCTTCAAACGCAGTATAATCTTAGTCAAAGCTTGGTGCTATTATGAGAGCCGAATTCTTGGTGCACACCATGGCCTGCTGTCAACATATGCAGTTGAAATATTAGTTTTGTATATTATCAATTGTTTTCATTCATCATTGCACGGTCCTCTAGAGGTGCTATACAGATTTTTGGACTACTACAGCACATTTGATTGGGATAAGAATTATGTCACCATAGATGGTCCACAAGCCTTATCCTCCCTTCCAGAAATTGTTGAGAAACCAGAATGTGATCGAGGTGGATTGTTGCTCAGTAAAGAGCTTCTGAAAAATTACAGGGATATGTGCTCTGTTCCAAAAGCATCCGAAACTTTTCCCCGTGAATTTTCCATCAAGGTCATGAACATTTTGGATCCCCTAAAAAATGACAACAATCTAGGCCGTAGTGTTAACACAGCCACTTTTCATCGAATTAAACTCGCTCTTACCTTCGGTGCTCGAAATCTTAAGAAGATCCTTAAAATTCCAGGACAAAGCATGGGTGGAGCACTTGAGCTGTTTTTCAGGAATACCTTGAATAGAAATGGGAAAGGACAAAGGCCAGATATTGATGTTCCTGTTCATGCATTTGGTACTGGAAAATCTGAAAAGCCTGTCCTTGTTGGAGATTGTGACAACTACTATGGTGGCTTACAGTATGTTCAGTTGTATGGTAACCATGCCATGCCACTTGTTGCACATTCGAGTTCCTCATCAATACAACAAAACTGGTATATGTATTATCATAGAGGTGCTGACTTATATGTCCCAAGACAGACATTATTTCCTCCAAATGCTCCGGCACCACTAACTTATAGCTTTGAAGACATAGGGAAATCGCGAGGAACAGGCACATACATACCTAACATGACTCATAGTACCTACTGGAATCCCCGTGCTAGAAGTTCCAGGCCAAGGAGATTAGGTCATGGGAATGGTCAAAACAATAATAATAATAATAATAATAATAATAATAATAATGATAATAATGATGTATCGTCCAAATTATCCGAGAGAAAGAAAATTGAAGAGGTTCTTCCTGAGATTGATATGGATAATAATAATTCCAAGTCTTTTGAGCTGGCAAATGAAGATTTTCCTATTCTCCAAAACATTGGCAACACCAGATCGTCAGCATCCCAAAAATCTGAGCAGGACCAGAATTCGGCACCCCCTCAAATAATTATTGAGTTCGGAACTTACAGTATCTCACAACCATTGACAGAGCTGAGCTTGGGAACAAAGGATCAGAAAGGCGATTCTAGTGTTTCATCTTCTCAAGGCGCTGCACCAGTTCTTCCAAGTCTTCCGGTGGAGTCAAAAGAGATATGTACTCGGATCGAAGAGAAGATGAATTGA	1821	0.402	MDEELWFMAEERAQEILCIIQPNVVSEANRKKVIDFVKRLIGGYYGGEVFVFGSVPLKTYLPDGDIDLTVLCHESVEEDLPQAVCNLLGSGEDLEYKVKDIQHIRAQVKVVKCTVKNIAVDISFNQMAGLYALHFLEQVDELVGKNHVFKRSIILVKAWCYYESRILGAHHGLLSTYAVEILVLYIINCFHSSLHGPLEVLYRFLDYYSTFDWDKNYVTIDGPQALSSLPEIVEKPECDRGGLLLSKELLKNYRDMCSVPKASETFPREFSIKVMNILDPLKNDNNLGRSVNTATFHRIKLALTFGARNLKKILKIPGQSMGGALELFFRNTLNRNGKGQRPDIDVPVHAFGTGKSEKPVLVGDCDNYYGGLQYVQLYGNHAMPLVAHSSSSSIQQNWYMYYHRGADLYVPRQTLFPPNAPAPLTYSFEDIGKSRGTGTYIPNMTHSTYWNPRARSSRPRRLGHGNGQNNNNNNNNNNNNNDNNDVSSKLSERKKIEEVLPEIDMDNNNSKSFELANEDFPILQNIGNTRSSASQKSEQDQNSAPPQIIIEFGTYSISQPLTELSLGTKDQKGDSSVSSSQGAAPVLPSLPVESKEICTRIEEKMN	606

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre5g04167	606	Gene3D	-	195	316	-	-
	Trre5g04167	606	Pfam	Nucleotidyltransferase domain	31	112	IPR002934	GO:0016779
	Trre5g04167	606	MobiDBLite	consensus disorder prediction	436	490	-	-
	Trre5g04167	606	PANTHER	PAP/OAS1 SUBSTRATE-BINDING DOMAIN SUPERFAMILY	2	345	-	-
	Trre5g04167	606	MobiDBLite	consensus disorder prediction	565	585	-	-
	Trre5g04167	606	CDD	NT_PAP_TUTase	29	136	-	-
	Trre5g04167	606	Gene3D	Beta Polymerase, domain 2	11	147	IPR043519	-
	Trre5g04167	606	SUPERFAMILY	PAP/OAS1 substrate-binding domain	148	314	-	-
	Trre5g04167	606	MobiDBLite	consensus disorder prediction	462	486	-	-
	Trre5g04167	606	SUPERFAMILY	Nucleotidyltransferase	3	167	IPR043519	-
	Trre5g04167	606	MobiDBLite	consensus disorder prediction	438	454	-	-
	Trre5g04167	606	MobiDBLite	consensus disorder prediction	565	591	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre5g04167	Trre-Chr5	43308839	43314117	Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre5g04167	-		-	aip:107623369	676.396