Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04162 ATGGCGAACCACATACTACACAACAACAATACTGTTTTTCTGCACTTCATCATTCTCTTCCTTTCTATTTCCTCACTTTTGGTCTCATCATCAACAACAATTCTGCCTTTCTTGCAAAATTACCGAAAACCCATTTTCAGATCAAATTTTCACAATATTTATGATACTTCCAACTATGGTGTTTTTCAACTCACTAATGGATTGGCTCTCACTCCTCAGATGGGATGGAACAGCTGGAACTTCTTTGCATGCAATATCAATGAAACACTTATTAAGGAAACAGCTGATGCATTGATATCAACTGGATTGGCTAAGTTAGGTTATGATTATGTCAATATAGATGATTGCTGGTCTTCTGTGACAAGAAATTTGAAGGGTGACCTTGTCCCTGATGGTAAGACATTTCCGTCCGGAATTAAAGCACTTGCAGATTATGTGCATGCAAAGGGACTCAAGCTTGGCATATATTCTGATGCAGGGGTTTTTACATGTCAAGTTCGACCAGGATCTATTTTCCACGAACATGATGATGCAGATTTATTTGCCTCTTGGGGCGTAGATTATTTGAAATACGACAATTGTTACAATCTGGGCATCCCTCCAAAAAAAAGATATCCACCTATGCGTGATGCTCTCAACGAAACTGGACGCAAAATTTTCTATTCAATCTGTGAATGGGGTGTTGACGATCCTGCTTTATGGGCAGGCAAGGTTGGTAACAGTTGGCGAACAACAGACGACATCAATGATACGTGGGCAAGCATGACAACTATTGCCGATCTTAATGACAAGTGGGCTTCATATGCGGGTCCTGGAGGATGGAATGACCCAGATATGTTGGAAGTTGGCAATGGTGGCATGACTTACCAGGAATACCGTGCTCACTTCAGCATCTGGGCATTAGCTAAGGCTCCTCTATTGATTGGTTGTGATGTAAGAAATTTGACTGCTGAAACACTTGAGATTTTAATCAATAAAGAAGTCATTGCTATAAATCAAGACTCACTTGGAGTCCAGGGAAGGAAAGTTCAAGTTTCTGGAATAGATGGTTGCAGTCAGGTATGGGCAGGTCCTTTAACAGGAAACCGTTTAGCCGTTGCTCTGTGGAATCGATGCTCAAAAGCTACCAATATAACAGCTTCATGGGAAGCACTTGGGCTTGAATCTGGAATTCATGTTTCAGTTAGGGATTTGTGGCAGCACAAGGTAATAAATGGAGATGCAGTGTCATCAATCAGTGCTCAAGTTGATTCTCATGCTTCTGAGTTGTACATTTTAACTCCATCTACAGCATCTTATTCTGTACAGTAA 1311 0.4081 MANHILHNNNTVFLHFIILFLSISSLLVSSSTTILPFLQNYRKPIFRSNFHNIYDTSNYGVFQLTNGLALTPQMGWNSWNFFACNINETLIKETADALISTGLAKLGYDYVNIDDCWSSVTRNLKGDLVPDGKTFPSGIKALADYVHAKGLKLGIYSDAGVFTCQVRPGSIFHEHDDADLFASWGVDYLKYDNCYNLGIPPKKRYPPMRDALNETGRKIFYSICEWGVDDPALWAGKVGNSWRTTDDINDTWASMTTIADLNDKWASYAGPGGWNDPDMLEVGNGGMTYQEYRAHFSIWALAKAPLLIGCDVRNLTAETLEILINKEVIAINQDSLGVQGRKVQVSGIDGCSQVWAGPLTGNRLAVALWNRCSKATNITASWEALGLESGIHVSVRDLWQHKVINGDAVSSISAQVDSHASELYILTPSTASYSVQ 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04162 436 Gene3D Aldolase class I 64 336 IPR013785 -
Trre5g04162 436 PRINTS Glycosyl hydrolase family 27 signature 66 85 IPR002241 GO:0004553|GO:0005975
Trre5g04162 436 PRINTS Glycosyl hydrolase family 27 signature 204 222 IPR002241 GO:0004553|GO:0005975
Trre5g04162 436 PRINTS Glycosyl hydrolase family 27 signature 143 164 IPR002241 GO:0004553|GO:0005975
Trre5g04162 436 PRINTS Glycosyl hydrolase family 27 signature 269 288 IPR002241 GO:0004553|GO:0005975
Trre5g04162 436 PRINTS Glycosyl hydrolase family 27 signature 177 194 IPR002241 GO:0004553|GO:0005975
Trre5g04162 436 PRINTS Glycosyl hydrolase family 27 signature 102 117 IPR002241 GO:0004553|GO:0005975
Trre5g04162 436 PRINTS Glycosyl hydrolase family 27 signature 290 311 IPR002241 GO:0004553|GO:0005975
Trre5g04162 436 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 14 428 IPR002241 GO:0004553|GO:0005975
Trre5g04162 436 CDD GH27 72 334 IPR002241 GO:0004553|GO:0005975
Trre5g04162 436 Pfam Alpha galactosidase A 71 334 IPR002241 GO:0004553|GO:0005975
Trre5g04162 436 SUPERFAMILY Glycosyl hydrolase domain 336 428 - -
Trre5g04162 436 FunFam Alpha-galactosidase 337 429 - -
Trre5g04162 436 FunFam Alpha-galactosidase 64 336 - -
Trre5g04162 436 SUPERFAMILY (Trans)glycosidases 64 334 IPR017853 -
Trre5g04162 436 ProSitePatterns Alpha-galactosidase signature. 107 123 IPR000111 GO:0004553|GO:0005975
Trre5g04162 436 Gene3D - 337 429 IPR013780 -
Trre5g04162 436 Pfam Alpha galactosidase C-terminal beta sandwich domain 350 425 IPR041233 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04162 Trre-Chr5 43250431 43254850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04162 16 434 Glycoside Hydrolase AT3G56310 69.267 0.0 605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04162 K07407 - gmx:100784072 749.584