Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04049 ATGGAGAATTCAACTCAAGAATCACACATCCGATCTGAAAACTCTGTTACCTACGATTCCCCTTATCCTCTCTACGCCATGGCTCTTTCTCCGAACACCAATTCACACCCACAACAACGCATCGCCGTTGGTAGTTTCATCGAAGAATACACCAACCGCATCGATATCCTCAATTTCAACCCTGAAAATTTCTCAATTAAACCTCAACCTTCACTTTCCTTCGATCATCCTTATCCACCTACCAAACTCATGTTCCATCCCGCAACAAATTCATCTCTCCAGAAAACCTCCTCCGACCTTCTAGCTACTTCCGGTGACTATCTCCGTCTTTGGGAAGTTCGCGAAAATTCGGTTGAGGCTCTTTCTCTTTTCAACAACAGCAAAACAAGTGAGTTTTGTGCTCCTTTAACGTCATTCGATTGGAACGAAATTGAGCCGAAGAGAATTGGAACTTCAAGCATTGATACTACTTGCACAATTTGGGACATTGAAAGAGGCGTTGTTGAAACGCAGCTTATTGCACATGATAAAGAGGTTTATGACATTGCTTGGGGTGAATCGAGGGTTTTTGCTTCGGTTTCTGCTGATGGGTCTGTTAGGATTTTTGATTTGAGGGATAAAGAGCATTCAACTATTATCTATGAGAGTCCTCAACCAGATACCCCTTTGCTTCGTTTGGCTTGGAACAAGAAGGATTTGAGGTATATGGCTACAACTTTGATGGATAGTAATAAAGTTGTGATTTTGGATATTAGGTCGCCGACTATGCCTGTGGCAGAATTGGAGAGACATCGTGCTGGTGTTAATGCTATTGCTTGGGCTCCAAGAAGTTCTAAGCATATTTGTTCTGCTGGGGATGATTCACAGGCTCTTATTTGGGAGTTGCCTACTGTGGCTGATGCAGCTTTTGCGGGTTTGAGTTTTAGATATTTAGTTGGAGAAGTACAGTAG 951 0.4269 MENSTQESHIRSENSVTYDSPYPLYAMALSPNTNSHPQQRIAVGSFIEEYTNRIDILNFNPENFSIKPQPSLSFDHPYPPTKLMFHPATNSSLQKTSSDLLATSGDYLRLWEVRENSVEALSLFNNSKTSEFCAPLTSFDWNEIEPKRIGTSSIDTTCTIWDIERGVVETQLIAHDKEVYDIAWGESRVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKKDLRYMATTLMDSNKVVILDIRSPTMPVAELERHRAGVNAIAWAPRSSKHICSAGDDSQALIWELPTVADAAFAGLSFRYLVGEVQ 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04049 316 SMART WD40_4 123 162 IPR001680 GO:0005515
Trre5g04049 316 SMART WD40_4 254 294 IPR001680 GO:0005515
Trre5g04049 316 SMART WD40_4 165 203 IPR001680 GO:0005515
Trre5g04049 316 SMART WD40_4 67 112 IPR001680 GO:0005515
Trre5g04049 316 ProSiteProfiles Trp-Asp (WD) repeats profile. 172 212 IPR001680 GO:0005515
Trre5g04049 316 PANTHER WD REPEAT CONTAINING PROTEIN 5 300 IPR045159 -
Trre5g04049 316 Pfam WD domain, G-beta repeat 172 203 IPR001680 GO:0005515
Trre5g04049 316 Pfam WD domain, G-beta repeat 258 293 IPR001680 GO:0005515
Trre5g04049 316 Gene3D - 30 304 IPR015943 GO:0005515
Trre5g04049 316 ProSiteProfiles Trp-Asp (WD) repeats profile. 261 295 IPR001680 GO:0005515
Trre5g04049 316 SUPERFAMILY WD40 repeat-like 21 296 IPR036322 GO:0005515
Trre5g04049 316 ProSitePatterns Trp-Asp (WD) repeats signature. 281 295 IPR019775 -
Trre5g04049 316 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 261 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04049 Trre-Chr5 42025145 42026718 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04049 K11805 - csav:115716803 515.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04049 5 42025145 42026718 Trre5g04049 5 42025145 42026718 ECH