Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04046 ATGTCTATAATCATAATAAAATCTCCACAACATTGTGAAACAAAACAAACACTAATAAAGAGAAACTACAAGAAAATCTTCTTTGCTTTTTCAACATTTTTCACCATAATTCTATTACTTATACTTCTTATCTATTTCATCCTTAAACCCACCAAACCGCAATTCTCCCTCCAAGAACTTGACATCTATCAACTAAACCTCTCAGGACCAATCCTCAGCTCCTCAATTCAACTCACTCTCCTCTCAAAAAATCCAAACCAAAAAGTTAGCATTTACTATGACGAGTTTCAAGTTTATGCAACTTACAAGAATCAACAAATAACTAGTGATTCATTTGTGCCACCCTTTTACCAAGGACAACAAGAGAGTAATCTTTTATCATCTTCTTTGATTGGAAATGGTTTACCTGATGCTCCTTCTATTAGTTATGAATTGGGTCATGATCAAAATTCTGGAAGATTGAGTTTGAATCTTAAAGCTAATGGAAAACTTCGTTGGAAAATCGGTACTTGGGTTTCTGGTCGTTATAGGTTTAATGTTAATTGTGTTTATGTTGTGACTTTTGGAATTGGAAGCTCTATGAATGTGCCTCCCCTGACCTCAAAACAGGGTGCTCTGTGTTCTACTCAAATTTTAACATAA 642 0.3427 MSIIIIKSPQHCETKQTLIKRNYKKIFFAFSTFFTIILLLILLIYFILKPTKPQFSLQELDIYQLNLSGPILSSSIQLTLLSKNPNQKVSIYYDEFQVYATYKNQQITSDSFVPPFYQGQQESNLLSSSLIGNGLPDAPSISYELGHDQNSGRLSLNLKANGKLRWKIGTWVSGRYRFNVNCVYVVTFGIGSSMNVPPLTSKQGALCSTQILT 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04046 213 PANTHER OS05G0367900 PROTEIN 23 193 IPR044839 GO:0098542
Trre5g04046 213 Pfam Late embryogenesis abundant protein 79 182 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04046 Trre-Chr5 41956416 41957057 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04046 6 186 EF-hand Containing Proteins AT5G21130 21.466 7.46e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04046 - - gmx:100783857 268.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04046 5 41956416 41957057 Trre5g04046 5 41956416 41957057 ECH