Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03904 ATGGAAGCTTCTTCGTGTTTTGTTCCATCACCCTCTTTCATTGGATTCAGGACGAGCAAAGAGCTTCCACATGTGCTCTCGGTGCACGAGTTCAAAAGAATAATATGCTTCTCGGTTTGTAATCAAAAGCAAAGTTATAATGAAAAGCTTTACATTATACCCATTAGGACCATTTCTCGATTCTGCATTTCAAGATCTTTCGCTAGGTCGTTGGAACTTGGAGGGACAGGAAGGCAAAGTGATGCTTATTCAGGTTATTCAGCTCCTAATGACAATCAGAGATTCAGCAACTATGAGAAAGAATTGGAAGAATTATTTGGTGAAGTGAAAAAAATGATCAAGATGGGAAAGAAAAATGATGCCATAGACCTGCTTAATGCAAATTACGAAATGGTGAAAGAGCGGCTTAATGCAGGCACTAAAGGCATAGAGGAAGCTGCTATTTTAGACATACTAGCTCTGGGTTACATTGCTGTTGGAGACATGAAATCTGTTGGTTGTCTGTTGAATTTGTTGCAAGAAGTTGTTGATACCTTAAAGGATGATGCACCACATCTAGACTCGATACTTATGCATATGGGAAGTATGTATGCGACGTTGAACAAGTTTGAAGAGTCATATGACATGTATCAAAGGGCTGTCTACAATGTGGAGAAGAATTTTGGTAAGGATAGCACTATTCTTGTAACACCCTATTTGGGTATGGCAAAAGCGCTCGGTTCTATTGGAAAAGCAACAAAAGCAATAGAGATATACCAACAGGTAATCACTCTTTTGGAATCAAGTAAAGGTGCTGAAAGTAAGCATTTGGTTGTACCTTTACTTAGTCTTGGAAATCTTTTACTGAAAGAAGGACGAGTCAATGATGCAGAAAGTCATTTTACTAGGGTTCTAAACATATATACAAAAGTATATGGAGAAAATGATGGAAGAATTGGAATGGCTATGAGTTCCCTAGCCCAAGTGAAGTGTGCTCTAGGGAAGTCAGATGAAGCGATTGATTTGATCAAACGTGCTCTTAAGGTCATGACGGATTCAAATTACATGTCACCAGACAACAGTATAATGGAAAAGATGAGGGTAGATTTAGCTGAATTACTCCATACTTCTGGAAGAGGACAAGAAGGAAGAGAGATATTAGAGGAGTGCTTATTGATTACAGAGACGTACAAAGGAAAGGAGCATCCCAGCTTAGCCACGCATATGATAAATCTCGCGACTTCGTACACACGGTCAAAGAATTATGCGGAGGCTGAGCATTTGCTGAGAAGAAGTTTGCAAATCATGATAAAGCATAAGGGAACTGATAACCAATCCATCAGCTTCCCTATGTTGCATCTAGCAGTTACACTATACCATTTGAAAAATGACGAAGAAGCTGAGAAGCTCGCCCTGGAGGTTTTACGCATCCGTGAAAAAGCTTTTGGAGTAGATTCTCTTCCTGTCGGAGAGGCTTTGGACTGCTTAGTGTCTATTCAAATGAGACTTGGTAAAGATGATAGTGAGTTACTGGAGATGCTTAAAAGGATCCTGAATATCCAAGAGAAAGGATTCGGACATGAGAGTGAGCAAGTTTTGGTTACCCTAAAGAAAATTGTATACTACTTAAATAAGTTAGGGAGAAAAGATGAAAAGCTTCCCCTGCAAAGAAGGTTATCTTTGCTTAGGAAGAAGTATAAGCAGATGGTCCATGATTAA 1698 0.3934 MEASSCFVPSPSFIGFRTSKELPHVLSVHEFKRIICFSVCNQKQSYNEKLYIIPIRTISRFCISRSFARSLELGGTGRQSDAYSGYSAPNDNQRFSNYEKELEELFGEVKKMIKMGKKNDAIDLLNANYEMVKERLNAGTKGIEEAAILDILALGYIAVGDMKSVGCLLNLLQEVVDTLKDDAPHLDSILMHMGSMYATLNKFEESYDMYQRAVYNVEKNFGKDSTILVTPYLGMAKALGSIGKATKAIEIYQQVITLLESSKGAESKHLVVPLLSLGNLLLKEGRVNDAESHFTRVLNIYTKVYGENDGRIGMAMSSLAQVKCALGKSDEAIDLIKRALKVMTDSNYMSPDNSIMEKMRVDLAELLHTSGRGQEGREILEECLLITETYKGKEHPSLATHMINLATSYTRSKNYAEAEHLLRRSLQIMIKHKGTDNQSISFPMLHLAVTLYHLKNDEEAEKLALEVLRIREKAFGVDSLPVGEALDCLVSIQMRLGKDDSELLEMLKRILNIQEKGFGHESEQVLVTLKKIVYYLNKLGRKDEKLPLQRRLSLLRKKYKQMVHD 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03904 565 Gene3D Tetratricopeptide repeat domain 357 564 IPR011990 GO:0005515
Trre5g03904 565 SUPERFAMILY TPR-like 188 428 IPR011990 GO:0005515
Trre5g03904 565 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) 92 560 - -
Trre5g03904 565 Gene3D Tetratricopeptide repeat domain 183 356 IPR011990 GO:0005515
Trre5g03904 565 Pfam MalT-like TPR region 176 468 IPR041617 -
Trre5g03904 565 SMART tpr_5 271 304 IPR019734 GO:0005515
Trre5g03904 565 SMART tpr_5 187 220 IPR019734 GO:0005515
Trre5g03904 565 SMART tpr_5 441 474 IPR019734 GO:0005515
Trre5g03904 565 SMART tpr_5 313 346 IPR019734 GO:0005515
Trre5g03904 565 SMART tpr_5 229 262 IPR019734 GO:0005515
Trre5g03904 565 SMART tpr_5 399 432 IPR019734 GO:0005515
Trre5g03904 565 ProSiteProfiles TPR repeat profile. 187 220 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03904 Trre-Chr5 40143850 40147968 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03904 - - gmx:100805230 859.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03904 5 40143850 40147968 Trre5g03904 5 40143850 40147968 ECH