Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03873 ATGGGTGCTGCTGCAATGGTTTGGAATCCAGACCTAATTCACTATCTATGCATTGCAAAATCAACAACAATCCTTGCACATCACATCAATAGTAATTCAAAAGATTCAAACAACATTGAATCATTAGCATCTAAATGCTTAGAACAATCTCCTCCAAATCATTCTTTTTTCTCTCACACAGTTAATAATCGCACCTACACTTTTCTAATTGAACCCCCCTTTATTCTCTTCGCAATTTTCGATCAAAACCTTCTCAAATCCGACGCACTTTCTTTCCTCAACCGTATCAGATCCTCCCTCACCGAAACCCTCAATCAAAATGACAACTTTACCCCTTTCTCCCTTCAACCCCAATTCGATTCCGTTTTTAACGAAACCCTAAATTTCTACGATTTATCTTCTAATTCCAGTAATGGAAAGCCTTCGCCGCCGACTACACTTCCTCTACTCGGGAAACAAGGTGAAGGGTTGAAGAAAAAAAAGAGACTTGTTGATGATGGTAAAGAAGCTGCAATGGTGGATTTGACCTCAGACGACGTCGTTTCGTGTCCGTTGAATAATCGTCAGAAAGCGAAGCATATATGGAAGAAACATGTTTGGGTTGTGTTGCTGCTTGATTTGTTTGTTTGTTTGGTTTTGTTTGTGATTTGGTTATGGGTTTGCAGCGGTTTTCAATGCATGGCTTATTGA 690 0.3957 MGAAAMVWNPDLIHYLCIAKSTTILAHHINSNSKDSNNIESLASKCLEQSPPNHSFFSHTVNNRTYTFLIEPPFILFAIFDQNLLKSDALSFLNRIRSSLTETLNQNDNFTPFSLQPQFDSVFNETLNFYDLSSNSSNGKPSPPTTLPLLGKQGEGLKKKKRLVDDGKEAAMVDLTSDDVVSCPLNNRQKAKHIWKKHVWVVLLLDLFVCLVLFVIWLWVCSGFQCMAY 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03873 229 PANTHER PHYTOLONGIN PHYL1.2 6 226 IPR044783 GO:0016020
Trre5g03873 229 SUPERFAMILY SNARE-like 13 130 IPR011012 -
Trre5g03873 229 Gene3D Longin domain 3 136 - -
Trre5g03873 229 ProSiteProfiles Longin domain profile. 12 123 IPR010908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03873 Trre-Chr5 39664687 39665376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03873 15 226 Miscellaneous Gene Families AT3G54300 21.702 4.35e-14 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03873 - - cam:101512957 224.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03873 5 39664687 39665376 Trre5g03873 5 39664687 39665376 ECH