Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03872 ATGGAGTCTCTTGAACTCCCTCGTCTCTTTCTTCATCACCATCCTCGCGCATCATCATCATCTTCTTCACCTCTTCCAACTAGACTTCATACTAGCAACACACGTTTCTTACCTCAACTGGGTTTCCCTTCTAAGCTTAAAAAAGCTACTAAAAATGCCACCTTGCGATCAATTTCAGGTGACACTGATGGTGGTTCCACCGCTTCACAAGATGGACCTGTTTCATTCGAAGATGAAACCCAACAACGGGATGAAGATAGGGCTCTCTTGTTGTCTAGAGAGATTGATGATTATGGTTCTCTTGTTGGCTTTCGTTTGAATTCTAACTCTGGGAAAACGAATGGCATTCAAGGGGATTTAAGGAGTGGTGAAGTTGAAAAACCGGATGTTGATAGTGTAGAAGAAGAGAAGGCCAAGACTGGAGTGACCTATAATATTGTTTTTGTTACATCTGAAGCTGCACCGTATTCTAAGACCGGTGGCCTTGCGGATGTTTGTGGTTCTTTGCCAATAGCACTGGCTGGTCGTGGACACCGTGTTATGGTTATCTCTCCCAGATACATACATGGTACTGCCGCGGATAGTAAGTTTTCTAATGCAGTTGATCTTGGTAGCCCTGTCAGTGTATTTTGCTTCGGAGGTGCTCAAGAAGTTGGTTTTTACCATGAGTATAGAGAAGGTGTTGATTGGGTATTTGTGGATCACCCTTCATTCCATAGACCAGGGAATCCTTATGGGGATAAGCATGGGACTTTTAAGGATAATCAGTTTCGGTTCACTTTACTTTCCCATGCAGCATGTGAAGCGCCATTAGTGCTTCCATTGGGAGGGTACACTTATGGAGAAAAATGTCTATTCCTCGTAAATGATTGGCATGCCAGCCTAGTTTCAGTACTTTTGGCAGCAAAGTATCGTCCATATGGGGTATATAAGGATGCACGTAGTATATTAGTGATTCACAATATTGCACATCAGGGAGTTGAACCTGCAATTACATATAGCAATTTGGGGTTGCCTCAAGAATGGTATGGAGCACTAGGATGGGTGTTCCCTACTTGGGCGAGGACGCATGCTCTTGACACAGGTGAAGCTGTCAATTTTCTAAAAGGTGCCATTGTTACATCTGATCGGATAGTAACAGTAAGCAAGGGCTATTCTTGGGAGATAACAACTAATGAAGGTGGATTCGGTCTACATGAGATATTACGTGATAGAAAAAGTATTCTCAGCGGGATTACAAATGGAATTGATGTTACTGAATGGGACCCATCATCTGATGAACATATTGCCAGCAACTATTCTGCTGATGATCTTTCTGGGAAGGTGAAATGCAAGATTGCCTTGCAGAAGGAATTGGGTCTTCCAGTAAGGCCTGATTGTCCGATGATTGGATTCGTTGGAAGACTTGATTACCAGAAAGGTATTGACCTGATTCGCCAGGCGATTCCAGAGCTTATGAAAGATGATGTTCAGTTTGTAATGCTTGGTTCTGGAAACCCTGTTTATGAAGATTGGATGAGAGCAACAGAATCAATTTATAAAGATAAATTCCGGGGTTGGGTTGGATTTAATGTTCCAGTATCTCATAGAATAACAGCAGGCTGCGATATACTGTTAATGCCATCCACGTTCGAGCCCTGTGGACTAAATCAGTTGTATGCAATGAGATACGGAACTATACCGGTGGTGCACGAAACTGGGGGACTAAGAGATACTGTTCAAACTTTTAATCCATTTCCTGCTGGAAGCAATGCCGAAGGATGTAATGCAGAAGGCACAGGGTGGACGTTTTCTCCGCTGACAAAGGAGAGCATGTTAGTGGCTCTAGGATACGCCATACAAACATTTAATGAACACAAGTCTTCATGGGAGGGATTGATGAAAAGAGGTATGACGAGAGATTACACGTGGGAAAACGCCGCAACTCAATATGAGCAAATCATCAAGTGGGCATTCATGGATCCACCCTATTGCTGA 1977 0.432 MESLELPRLFLHHHPRASSSSSSPLPTRLHTSNTRFLPQLGFPSKLKKATKNATLRSISGDTDGGSTASQDGPVSFEDETQQRDEDRALLLSREIDDYGSLVGFRLNSNSGKTNGIQGDLRSGEVEKPDVDSVEEEKAKTGVTYNIVFVTSEAAPYSKTGGLADVCGSLPIALAGRGHRVMVISPRYIHGTAADSKFSNAVDLGSPVSVFCFGGAQEVGFYHEYREGVDWVFVDHPSFHRPGNPYGDKHGTFKDNQFRFTLLSHAACEAPLVLPLGGYTYGEKCLFLVNDWHASLVSVLLAAKYRPYGVYKDARSILVIHNIAHQGVEPAITYSNLGLPQEWYGALGWVFPTWARTHALDTGEAVNFLKGAIVTSDRIVTVSKGYSWEITTNEGGFGLHEILRDRKSILSGITNGIDVTEWDPSSDEHIASNYSADDLSGKVKCKIALQKELGLPVRPDCPMIGFVGRLDYQKGIDLIRQAIPELMKDDVQFVMLGSGNPVYEDWMRATESIYKDKFRGWVGFNVPVSHRITAGCDILLMPSTFEPCGLNQLYAMRYGTIPVVHETGGLRDTVQTFNPFPAGSNAEGCNAEGTGWTFSPLTKESMLVALGYAIQTFNEHKSSWEGLMKRGMTRDYTWENAATQYEQIIKWAFMDPPYC 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03872 658 MobiDBLite consensus disorder prediction 122 136 - -
Trre5g03872 658 MobiDBLite consensus disorder prediction 14 43 - -
Trre5g03872 658 Gene3D Glycogen Phosphorylase B; 418 634 - -
Trre5g03872 658 CDD GT5_Glycogen_synthase_DULL1-like 145 650 - -
Trre5g03872 658 MobiDBLite consensus disorder prediction 15 39 - -
Trre5g03872 658 FunFam Starch synthase, chloroplastic/amyloplastic 145 430 - -
Trre5g03872 658 NCBIfam glycogen/starch synthase, ADP-glucose type 145 647 IPR011835 GO:0004373
Trre5g03872 658 Hamap Glycogen synthase [glgA]. 144 651 IPR011835 GO:0004373
Trre5g03872 658 PANTHER GRANULE-BOUND STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 133 657 - -
Trre5g03872 658 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 144 651 - -
Trre5g03872 658 MobiDBLite consensus disorder prediction 112 136 - -
Trre5g03872 658 MobiDBLite consensus disorder prediction 55 76 - -
Trre5g03872 658 Pfam Glycosyl transferases group 1 461 577 IPR001296 GO:0016757
Trre5g03872 658 Gene3D Glycogen Phosphorylase B; 164 647 - -
Trre5g03872 658 Pfam Starch synthase catalytic domain 145 403 IPR013534 -
Trre5g03872 658 MobiDBLite consensus disorder prediction 55 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03872 Trre-Chr5 39654652 39661861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03872 119 648 Glycosyltransferase AT3G01180 48.231 2.12e-168 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03872 K00703 - gmx:100807354 1049.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03872 5 39654652 39661861 Trre5g03872 5 39654652 39661861 ECH