Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03858 ATGGGTTGCTATTGTTCAAAAAATTCAAAGAAAGTTAGAAAAACACAAGGTTATGAGGATCCTACAGTTCTTGCCTCTGAGACACCTTGTGAGTATCCATCATCATTAACTGTTACTGTGAGTGAAGTGGAGGCATTATATGAACTCTATATGAAGTTAAGCAATTCAATTATTGAAGATGGTCTTATTCATAAGGAAGAATTTCAGCTAGCACTCTTCAGAAATGAAAACGAGAAGAATTTGTTCGCGGACAGGATTTTTGACTTATTCGATGTGAAGCGCAACGGGGTTATTGAGTTTGGTGAATTTGTTCGATCATTAGGTGTTTTTCACCCAAATGCACCTTTAGAAGACAAAATTGCATTTGCTTTTAAGTTGTATGATCTTAGACAGACAGGATACATTGAAAGAGAGGAGTTAAAGGAAATGGTATCGGCACTATTGCACGAATCGGATCTTGTGCTATCAGATGACATGATAGAATCTATTGTTGATAAGACTTTTAAAGATGCTGATACAAAAGATGATGGAAGGATTGATCAAGATGAGTGGAAAGCATTTGTGTCTCAGCATCCATCTTTGATAAAGAACATGACTCTTCCATATCTAAAGGATATTACCTTGGCATTTCCCAGTTTTATTGCAAGAACAGAAGTTGAAGACTCTGAGGAATGTGACTGA 681 0.3642 MGCYCSKNSKKVRKTQGYEDPTVLASETPCEYPSSLTVTVSEVEALYELYMKLSNSIIEDGLIHKEEFQLALFRNENEKNLFADRIFDLFDVKRNGVIEFGEFVRSLGVFHPNAPLEDKIAFAFKLYDLRQTGYIEREELKEMVSALLHESDLVLSDDMIESIVDKTFKDADTKDDGRIDQDEWKAFVSQHPSLIKNMTLPYLKDITLAFPSFIARTEVEDSEECD 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03858 226 PRINTS Recoverin family signature 179 199 - -
Trre5g03858 226 PRINTS Recoverin family signature 133 151 - -
Trre5g03858 226 PRINTS Recoverin family signature 86 107 - -
Trre5g03858 226 SMART efh_1 82 110 IPR002048 GO:0005509
Trre5g03858 226 SMART efh_1 119 147 IPR002048 GO:0005509
Trre5g03858 226 SMART efh_1 163 191 IPR002048 GO:0005509
Trre5g03858 226 CDD EFh 119 189 IPR002048 GO:0005509
Trre5g03858 226 ProSiteProfiles EF-hand calcium-binding domain profile. 159 194 IPR002048 GO:0005509
Trre5g03858 226 Pfam EF-hand domain pair 118 187 IPR002048 GO:0005509
Trre5g03858 226 Gene3D - 34 222 - -
Trre5g03858 226 PANTHER CALCINEURIN B 2 222 IPR045198 GO:0005509|GO:0019722|GO:0019900
Trre5g03858 226 FunFam calcineurin B-like protein 3 28 221 - -
Trre5g03858 226 ProSiteProfiles EF-hand calcium-binding domain profile. 78 113 IPR002048 GO:0005509
Trre5g03858 226 ProSiteProfiles EF-hand calcium-binding domain profile. 115 150 IPR002048 GO:0005509
Trre5g03858 226 SUPERFAMILY EF-hand 34 212 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03858 Trre-Chr5 39473711 39475152 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03858 38 223 EF-hand Containing Proteins AT5G24270 77.957 2.68e-104 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03858 K06268 - gmx:100811649 352.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03858 5 39473711 39475152 Trre5g03858 5 39473711 39475152 ECH