Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03792 ATGGGAGTTGTGACCGTTTCTAGCTCAGCTGCTCGGTCTCCACTTGGATTGAATACGAAATTTTCAACTCACCATTCTGTATTGAAGAGACCGATAATTGTAGCATTTAAAGGAGATAAACAGAATGACACAACTTTGGTTGCAACTCAAGAGAAAATTCCGACACAAGTTAAAACAAAGACGCACAAGAAAAGGATAGCGAAAACCAACAAACTACCTAAGAAAGCTAAACCTGTCTTCACTGAGGAAACAATTCCTTCTTCATTGGATGTGGACTACAATGAAGCTGCTGCTATACTTGAAAATATATACAAACTTAGTCCGCCATCCGATGCATGTGATGTAGAGTATATAAAAAGTAAGATCAAAAGAGTCTCTCGAAGGGGTAAGAAGATCGGTGATGTAAGTAAAGAGGAGTTAAACGATGATAGGGTGGTCAGAAGCCAGAAAACAAAAGCCAAACGGATGAATCTTGATGAGAGGATTGCATTAAAAACAAACGACAGTAGTGAAGAGGTCATTCCAACTCGGAAAAAAAGAAATGGAAGGAATAGAATTGAGAAGATTGGCCAACTTCTTAGGGAATATTCAGCACCGGCTGATTTGGTCAGTCTGGACTGGAAAAAAATGAAAATACCTCCAGTTCTTCCTTCTTCCGAGCATGCATTTTTGTTCAAGTTGATGCAACCGATGAAGGCACTCCTTCAAGTAAAAGAAGATTTAGAGAAAGAGCTAGCAAGAGAACCTACAGAGGCGGAAATAGCTGATGCAACAAACATGCGCACTACTCAAGTAAAGAAAACAATAGAGGTTGGTCGAGCTGCAAGAAACAAGCTGATAAAGCACAATCTCCGGCTTGTCTTGTTCGTGATCAACAGATACTTTTCCGATTTCTCTAATACCCAGAGGTTTCAAGATCTTTGTCAGGCAGGAGTTAAGGGACTTATAACAGCAATTGATCGTTTTGAGCCAAACCGGAAATTTCGGCTTTCAACCTACGGTTTGTTTTGGATAAGACATGCTATCGTTCGTTCCATGACCCTTGCAAGCTTCTCGCGGGTTCCCTTTGGACTTGAGTCGGTTAGAGCCGAGATCCAAAGAGCTAAAACTGAGTTAACATTTAAGCATCAGAGGGCACCAACAGAGGAAGAAATAATAGAAAGAGTTCACATATCACCTGAAAGATACCATGATGTAACGAAGGCATCAAAACCCATTCTTTCACTGCATTCGAGACATCTAACCACGCAAGAAGAGCTTATCAACGGTGTCGTTGATGATGGTGGTGTTGATGGAAATAATAGGAGGCAACCTGCTTTACTAAGGCTTGCTCTTGATGACGTGCTTGATTCGCTGAAGCCTAAGGAGAACTTGGTGATCAGACAGAGATTTGGACTCGATGGTAAGGGCGACAGAACATTGGGAGAGATTGCGTCAAACTTGAACATCTCTAGAGAAATGGTGAGAAAGCACGAAGTCAAGGCGCTCATGAAGCTCAAACTTTCAGCTCGATTGGATTATCTTCGTCGTTATGTTGTATAA 1542 0.4144 MGVVTVSSSAARSPLGLNTKFSTHHSVLKRPIIVAFKGDKQNDTTLVATQEKIPTQVKTKTHKKRIAKTNKLPKKAKPVFTEETIPSSLDVDYNEAAAILENIYKLSPPSDACDVEYIKSKIKRVSRRGKKIGDVSKEELNDDRVVRSQKTKAKRMNLDERIALKTNDSSEEVIPTRKKRNGRNRIEKIGQLLREYSAPADLVSLDWKKMKIPPVLPSSEHAFLFKLMQPMKALLQVKEDLEKELAREPTEAEIADATNMRTTQVKKTIEVGRAARNKLIKHNLRLVLFVINRYFSDFSNTQRFQDLCQAGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIVRSMTLASFSRVPFGLESVRAEIQRAKTELTFKHQRAPTEEEIIERVHISPERYHDVTKASKPILSLHSRHLTTQEELINGVVDDGGVDGNNRRQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMKLKLSARLDYLRRYVV 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03792 513 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 88 512 - -
Trre5g03792 513 NCBIfam sigma-70 family RNA polymerase sigma factor 275 500 IPR014284 GO:0003700|GO:0006352|GO:0006355
Trre5g03792 513 Gene3D - 269 347 - -
Trre5g03792 513 Gene3D - 436 513 IPR036388 -
Trre5g03792 513 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 354 417 IPR013324 -
Trre5g03792 513 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 439 511 IPR013324 -
Trre5g03792 513 Gene3D - 226 268 IPR036388 -
Trre5g03792 513 Gene3D - 353 404 IPR036388 -
Trre5g03792 513 Pfam Sigma-70 region 3 364 431 IPR007624 GO:0003700|GO:0006352|GO:0006355
Trre5g03792 513 Pfam Sigma-70 region 3 234 274 IPR007624 GO:0003700|GO:0006352|GO:0006355
Trre5g03792 513 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 198 346 IPR013325 GO:0003700|GO:0006352|GO:0006355
Trre5g03792 513 Coils Coil 358 378 - -
Trre5g03792 513 PRINTS Major sigma-70 factor signature 306 319 IPR000943 GO:0003700|GO:0006352|GO:0006355
Trre5g03792 513 PRINTS Major sigma-70 factor signature 488 499 IPR000943 GO:0003700|GO:0006352|GO:0006355
Trre5g03792 513 PRINTS Major sigma-70 factor signature 330 338 IPR000943 GO:0003700|GO:0006352|GO:0006355
Trre5g03792 513 PRINTS Major sigma-70 factor signature 473 488 IPR000943 GO:0003700|GO:0006352|GO:0006355
Trre5g03792 513 PRINTS Major sigma-70 factor signature 452 464 IPR000943 GO:0003700|GO:0006352|GO:0006355
Trre5g03792 513 Pfam Sigma-70, region 4 448 500 IPR007630 GO:0003700|GO:0006352|GO:0006355
Trre5g03792 513 Pfam Sigma-70 region 2 279 345 IPR007627 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03792 Trre-Chr5 38371022 38374206 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03792 K03093 - gmx:100776369 763.066