Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03746 ATGGTTCTCACATCATCGGCACGCGATTACATCAACAGAATCTTACAAGACATCTCTGGCATGAAAGTTCTCATCCTTGATTCTCAAACGGTTAGTATTGTGAGTGTTGTGTACTCACAATCAGAGCTTCTTCAGAAAGAAGTGTTTTTGGTGGAGTTGGTGGATTCAATTTCCAAGTCAAGTGAACCAATGTCACATCTCAAGGCCATTTACTTCCTTCGACCTACAGCAGAGAATATCCAATATATGCGCCGTCAGCTGGCTAGTCCTAGATTTGGAGAGTATCACCTATTTTTCTCCAACATATTGAAGGACCATCATATTCACTTACTTGCTGATTCAGATGAACAGGAAGTTGTCCAACAAGTTCAGGAGTTCTATGCAGATTATGTTGCAATTGATCCTTATCATTTCACTTTCCACATGCCTTCAAATTACATATATATGCTTCCAGCTGTCGTAGATCCTTCGGCACTGCAGCGTTTTAGTGATCGGGTTGTTGAAGGTCTTGCATCTGTTTTTTTGACATTAAAACGGAGACCAGTAATTAGATATCAAAGAACATCGGACATTGCAAAAAGAATAGCACAGGAAGCAGCTAAACTGATGTACCAAGAGGAAAGTGGTCTTTTTGATTTTAGGCGAATGGAAGTTTCTCCGTTGTTGTTGGTGATTGACAGGAGGGATGATCCTGTAACCCCATTGCTAAATCAATGGACCTATCAGGCTATGGTTCATGAATTGATAGGAATCCAAGACAACAAAGTGGATGTCAAATCCATTGGCAAATTTCCAAAAGATCAGGAGGAGGTTGTGCTTTCATCAGAACAAGATTCCTTTTTCAAAGCTAACATGTACGAGAATTTTGGAGATATTGGTATGAATATCAAGCGTTTGGTTGATGAATTTCAGCAAGTGGCAAAGAGTAATCAGAACATCCAAACAGTAGAGGACATGGCCAAATTTGTTGACAACTACCCTGAGTACAGAAAAATGCATGGGAATGTGACAAAACATGTGACTTTGGTAACAGAAATGAGCAAGATAGTTGAAGAGCGGAAACTTATGTTAGTTTCACAAACAGAACAGGAGTTGGCTTGCAATGGAGGGCAAGGAGCTGCTTTTGAGGCAGTGACAAATCTACTAAATGATGAAAGCATATCAGATATGGACCGACTACGTTTGGTCATGCTATATGCTTTGCGATATGAGAAGGACAGCCCTGTTCAATTAATGCAGCTTTTCAACAAACTGGCTTCCAGATCTGCCAAATACAAACCTGGGCTTGTCCAGTTTCTTTTGAAGCAGGCTGGTGTTGACAAGAGAACTGGTGATCTTTATGGAAATCGAGATCTAATGAACATTGCTCGTAACATGGCTCGTGGACTGAAGGGTGTTGAGAATGTTTACACCCAGCACCAGCCTCTTCTGTTCCAAATCATGGAAAGCATCGTCAAAGGGCGGTTGAAAGATGTGGATTACCCATTTTTTGGGAATCACTTTCAACAAGGAAGGCCCCAAGACGTAATTATCTTCATTGTTGGTGGGACAACATATGAGGAATCACGGTCTGTTGCTCTACAAAATGCCAGCAATACAGGCGTTCGGTTTATACTTGGTGGATCTTCTGTTCTTAATTCTAAAAGGTTTTTCAGGGACTTGGAAGAAGCTCAAAGGGTTGCTCGTTCTAGCACCTCTGTTTGA 1704 0.4114 MVLTSSARDYINRILQDISGMKVLILDSQTVSIVSVVYSQSELLQKEVFLVELVDSISKSSEPMSHLKAIYFLRPTAENIQYMRRQLASPRFGEYHLFFSNILKDHHIHLLADSDEQEVVQQVQEFYADYVAIDPYHFTFHMPSNYIYMLPAVVDPSALQRFSDRVVEGLASVFLTLKRRPVIRYQRTSDIAKRIAQEAAKLMYQEESGLFDFRRMEVSPLLLVIDRRDDPVTPLLNQWTYQAMVHELIGIQDNKVDVKSIGKFPKDQEEVVLSSEQDSFFKANMYENFGDIGMNIKRLVDEFQQVAKSNQNIQTVEDMAKFVDNYPEYRKMHGNVTKHVTLVTEMSKIVEERKLMLVSQTEQELACNGGQGAAFEAVTNLLNDESISDMDRLRLVMLYALRYEKDSPVQLMQLFNKLASRSAKYKPGLVQFLLKQAGVDKRTGDLYGNRDLMNIARNMARGLKGVENVYTQHQPLLFQIMESIVKGRLKDVDYPFFGNHFQQGRPQDVIIFIVGGTTYEESRSVALQNASNTGVRFILGGSSVLNSKRFFRDLEEAQRVARSSTSV 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03746 567 Gene3D - 2 128 IPR043154 -
Trre5g03746 567 PANTHER VESICLE PROTEIN SORTING-ASSOCIATED 14 554 IPR001619 GO:0016192
Trre5g03746 567 FunFam Vacuolar protein sorting-associated protein 45 homolog 353 474 - -
Trre5g03746 567 Gene3D Syntaxin Binding Protein 1; Chain A, domain 2 238 351 IPR043127 -
Trre5g03746 567 Gene3D - 155 555 IPR027482 -
Trre5g03746 567 Gene3D - 353 474 - -
Trre5g03746 567 FunFam Vacuolar sorting protein 3 128 - -
Trre5g03746 567 SUPERFAMILY Sec1/munc18-like (SM) proteins 3 556 IPR036045 -
Trre5g03746 567 PIRSF VPS45_Sec1 1 565 IPR001619 GO:0016192
Trre5g03746 567 Pfam Sec1 family 22 553 IPR001619 GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03746 Trre-Chr5 37569307 37575938 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03746 K12479 - gmx:100782786 1041.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03746 5 37569307 37575938 Trre5g03746 5 37569307 37575938 ECH