Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03716 ATGAGTCATCGTGGAATGGACGATGAAGACGACGAGGATTACGAGGACCAGGTCGCTGATTTCGATGAAGAGGAAGTGGATGAAGAAGAGGAGGATAGAGGCGGTGGAAAGAAACGGAGAAGATCTAGTTTTATTGACGATGATGCGGAGGAGGTGGATGAAGATGAGGAGGAAGAAGAGGAAGAGGATTATGAGGATGATGATTATGACGGTGGTGGGAAAAGCAGCCGTAAGCGACAGAAATCGAGGAAGGGTGCTTCGAATTTCTTTGAAATTGAGGCCGCTGTTGATTCTGATGAGGAGGAGGAAGAGGAAGAAGGAGATGACGATTTCATTGTTGAGCCCGGATCTGATCTGCCTTATGACGATGATAATAGAGGGAGGGCACGTCACAGACTGCCACCCCACCAAGAAGATCATGAAGATCTTGAAGCAATGGCAAGAAGCATACAAGAGAGATATGGAAAGCAGCGGATGGCAGATTATGATGAAGAAACTACAGATGTAGAACAGCAGGCGCTTTTGCCATCCGTGAGAGACCCAAAGCTGTGGATGGTCAAATGTGCGATTGGCCGTGAGCGTGAAACAGCTGTTTGTCTCATGCAAAAGTACATAGATAAGGGGTCTGAATTGCAAATCAGATCAGCTATTGCTCTTGATCATCTAAAAAATTATATATATGTGGAAGCAGATAAAGAAGCTCATGTTAGAGAGGCTTGCAAAGGTCTTCGCAATATATTTGGGCAAAAAATAACGCTTGTTCCAATAAGAGAAATGACTGACGTGCTGTCAGTTGAAAGCAAAGCCATTGATCTTGCTAGAGGTACTTGGGTTAGAATGAAGATTGGGACATACAAGGGGGACCTCGCCAAAGTAGTGGATGTGGATAATGTGCGGCAAAGGGTTACTGTGAAACTAATTCCGCGGATAGACTTACAGGCTCTCGCAAACAAATTGGAAGGTAGAGAAGTTGTGAAAAAGAAGGCATTTGTCCCCCCACCTCGGTTTATGAACGTCGATGAAGCTAGGGAACTGCATATCCGAGTGGAGCATAGGCGTGATGCCTATGGGGAACGGTTTGAAGCCTTTGGAGGCATGATGTTCAAAGATGGATTCTTATACAAAACTGTATCTATTAAATCCATTAGTGCTCAGAACATCAAACCTACATTTGACGAGCTTGAAAAATTTCGTAAACCGGGTGAGAGTGGAGATGGTGATGTAGCCAGTCTGTCAACTCTGTTTGCGAACAGAAAGAAAGGGCATTTCATGAAGGGTGATGCTGTTATTGTCATCAAGGGCGATTTGAAGAATTTGAAGGGATGGGTGGAGAAAGTGGATGAAGATAATGTTCATATAAGACCAGAAATAAAGGATCTTCCTAAAACTCTTGCAGTAAATGAAAAGGAACTAGTTAAATATTTTGAACCTGGAAACCATGTTAAAGTTGTTTCTGGTGCTCAAGAGGGTGCGACTGGCATGGTTGTGAAGGTGGAACAGCATGTTCTGATCTTAATATCTGATACCACAAAGGAGCATATCCGCGTGTTTGCAGACGATGTTGTAGAGAGCTCTGAGGTAACCACCGGTGTGACTAGAATTGGGGACTATGAACTTCGTGATCTTGTATTGCTAGATAATTTGAGTTTTGGTGTGATAATCCGTGTAGAAAGTGAGGCATTTCAGGTTCTCAAGGGGGTTCCTGACAGACCTGAAGTTGTACTTGTGAAATTAAGAGAGATCAAGTGTAAGATAGAGAAGAAAATAAGTGTGCAGGATAGATTTAAGAATACAATATCAGCAAAAGATGTTGTGAAGATAATTGATGGTCCCTGCAGAGGCAAACAAGGTCCTGTGGAGCACATATATAGGGGAATCTTGTTCATCTTTGATCGCCATCATCTTGAACATGCAGGCTTTATATGTGTTAAGGCCCACTCGTGTGTAGTTGTGGGAGGTTCACGGTCCAATGGTGACAGAAATGGTGATGCGCACACACGATTCCCCGGTCTTAGAACTCCATCTCGGATTCCACAGTCTCCAAGTAGGGTTCCTCGCGGAAGGCCTTCATCTGATTCTGGAGGGAGGCATAGGGGTGGAAGGGGGCATGATGGTTTGACTGGTGCCACAGTTAAAGTACGCCAGGGTTCCTATAAAGGTTATCGAGGGCGTGTTATTGAAGTTAAAGGAACATTTGTTCGGGTTGAATTGGAGTCCCAAATGAAGGTTGTAACAGTTGACCGTAATCATATAACTGACAATGTGGCTGTTACCCCACAACGTGAAACATCTCGATATGGGATGGGAAGTGAAACCCCAATGCATCCATCTCGAACTCCTTTGCATCCATATATGACTCCGATGAGAGATCCCGGAGCAACTCCAATTCATGATGGAATGAGGACACCTATGCGTGACCGAGCTTGGAATCCGTATGCACCAATGAGTCCTCCTAGAGATAACTGGGAAGATGGAAATCCAGGCTCTTGGGGTGCCAGTCCACAGTACCAGCCAGGAAGCCCCCCTTCCCGGCCATATGAAGCCCCAACTCCTGGTGCTGGGTGGGCTAGTACTCCCGGTGGCAATTATAGTGAGGCTGGAACGCCACGTGACAGTTCTGCCTATGCGAATGCTCCAAGCCCATATTTACCATCAACACCAGGTCAGCCTATGACACCAAATTCTGCGTCTTATCTTCCTGGCACCCCTGGAGGACAGCCCATGACTCCAGGAACTGGTGGTCTTGACATGATGTCACCCGTATTAGGTGGTGACACTGAAGGGCCTTGGTTTATGCCGGACATATTGGTCAATGTACACAGGGCCGGAGATGAGTCTGTTGGAGTTATAAAAGAAGTTCTACCGGATGGTTCATATAAGGTATGTCTTGGGTCTAGCGGAAATGGTGAAACAATAACAGCACTTCCCTCTGAAATGGAGGCTGTAGTTCCAAGGAAATCCGATAAAATAAAGATAATGGGCGGGGCGTTGCGCGGTTCCACCGGCAAGTTGATTGGTGTGGATGGTACTGATGGCATTGTAAAAGTAGATGACACATTGGATGTGAAGATTTTAGACTTGGTTATTTTGGCAAAATTAGCTCAGTCATGA 3111 0.4542 MSHRGMDDEDDEDYEDQVADFDEEEVDEEEEDRGGGKKRRRSSFIDDDAEEVDEDEEEEEEEDYEDDDYDGGGKSSRKRQKSRKGASNFFEIEAAVDSDEEEEEEEGDDDFIVEPGSDLPYDDDNRGRARHRLPPHQEDHEDLEAMARSIQERYGKQRMADYDEETTDVEQQALLPSVRDPKLWMVKCAIGRERETAVCLMQKYIDKGSELQIRSAIALDHLKNYIYVEADKEAHVREACKGLRNIFGQKITLVPIREMTDVLSVESKAIDLARGTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVVKKKAFVPPPRFMNVDEARELHIRVEHRRDAYGERFEAFGGMMFKDGFLYKTVSIKSISAQNIKPTFDELEKFRKPGESGDGDVASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEDNVHIRPEIKDLPKTLAVNEKELVKYFEPGNHVKVVSGAQEGATGMVVKVEQHVLILISDTTKEHIRVFADDVVESSEVTTGVTRIGDYELRDLVLLDNLSFGVIIRVESEAFQVLKGVPDRPEVVLVKLREIKCKIEKKISVQDRFKNTISAKDVVKIIDGPCRGKQGPVEHIYRGILFIFDRHHLEHAGFICVKAHSCVVVGGSRSNGDRNGDAHTRFPGLRTPSRIPQSPSRVPRGRPSSDSGGRHRGGRGHDGLTGATVKVRQGSYKGYRGRVIEVKGTFVRVELESQMKVVTVDRNHITDNVAVTPQRETSRYGMGSETPMHPSRTPLHPYMTPMRDPGATPIHDGMRTPMRDRAWNPYAPMSPPRDNWEDGNPGSWGASPQYQPGSPPSRPYEAPTPGAGWASTPGGNYSEAGTPRDSSAYANAPSPYLPSTPGQPMTPNSASYLPGTPGGQPMTPGTGGLDMMSPVLGGDTEGPWFMPDILVNVHRAGDESVGVIKEVLPDGSYKVCLGSSGNGETITALPSEMEAVVPRKSDKIKIMGGALRGSTGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLAQS 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03716 1036 PANTHER SUPPRESSOR OF TY 5 65 1013 IPR039659 GO:0006357|GO:0032784
Trre5g03716 1036 CDD KOW_Spt5_1 275 312 IPR041973 -
Trre5g03716 1036 FunFam Transcription elongation factor SPT5 691 754 - -
Trre5g03716 1036 Gene3D - 417 474 IPR014722 -
Trre5g03716 1036 SMART nusgn_4 180 266 IPR006645 GO:0140673
Trre5g03716 1036 CDD KOW_Spt5_3 474 524 IPR041976 -
Trre5g03716 1036 Pfam Spt5 transcription elongation factor, acidic N-terminal 89 176 IPR022581 -
Trre5g03716 1036 PIRSF Spt5 2 1036 IPR017071 GO:0006357|GO:0032784
Trre5g03716 1036 MobiDBLite consensus disorder prediction 94 117 - -
Trre5g03716 1036 MobiDBLite consensus disorder prediction 31 47 - -
Trre5g03716 1036 CDD KOW_Spt5_6 977 1034 IPR041980 -
Trre5g03716 1036 FunFam Transcription elongation factor SPT5 477 526 - -
Trre5g03716 1036 Pfam KOW motif 477 502 IPR005824 -
Trre5g03716 1036 ProSitePatterns Ribosomal protein L24 signature. 426 443 IPR005825 GO:0003735|GO:0005840|GO:0006412
Trre5g03716 1036 MobiDBLite consensus disorder prediction 673 687 - -
Trre5g03716 1036 CDD NGN_Euk 182 264 IPR039385 -
Trre5g03716 1036 Gene3D - 162 264 IPR036735 GO:0006355
Trre5g03716 1036 MobiDBLite consensus disorder prediction 119 134 - -
Trre5g03716 1036 FunFam Transcription elongation factor SPT5 271 313 - -
Trre5g03716 1036 MobiDBLite consensus disorder prediction 861 882 - -
Trre5g03716 1036 CDD KOW_Spt5_5 706 752 IPR041978 -
Trre5g03716 1036 Gene3D - 271 313 IPR014722 -
Trre5g03716 1036 Pfam Early transcription elongation factor of RNA pol II, NGN section 182 263 IPR005100 -
Trre5g03716 1036 FunFam Transcription elongation factor SPT5 417 474 - -
Trre5g03716 1036 Gene3D - 477 526 IPR014722 -
Trre5g03716 1036 MobiDBLite consensus disorder prediction 8 30 - -
Trre5g03716 1036 SUPERFAMILY Translation proteins SH3-like domain 466 525 IPR008991 -
Trre5g03716 1036 SMART kow_9 474 501 IPR005824 -
Trre5g03716 1036 SMART kow_9 704 731 IPR005824 -
Trre5g03716 1036 SMART kow_9 598 625 IPR005824 -
Trre5g03716 1036 SMART kow_9 271 298 IPR005824 -
Trre5g03716 1036 SMART kow_9 422 449 IPR005824 -
Trre5g03716 1036 SMART kow_9 983 1010 IPR005824 -
Trre5g03716 1036 MobiDBLite consensus disorder prediction 1 134 - -
Trre5g03716 1036 SUPERFAMILY Translation proteins SH3-like domain 415 453 IPR008991 -
Trre5g03716 1036 Gene3D - 690 754 IPR014722 -
Trre5g03716 1036 FunFam Transcription elongation factor SPT5 162 264 - -
Trre5g03716 1036 CDD KOW_Spt5_2 423 473 IPR041975 -
Trre5g03716 1036 MobiDBLite consensus disorder prediction 654 710 - -
Trre5g03716 1036 CDD KOW_Spt5_4 602 644 IPR041977 -
Trre5g03716 1036 MobiDBLite consensus disorder prediction 48 69 - -
Trre5g03716 1036 MobiDBLite consensus disorder prediction 791 920 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03716 Trre-Chr5 37034536 37040976 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03716 K15172 - gmx:100801380 1691.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03716 5 37034536 37040976 Trre5g03716 5 37034536 37040976 ECH