Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03714 ATGCAACATGTGACAAAAATTCGTGGAAACAGAGAAATTTTCAACTCATCAAATTGGTCTCGTTCAATAAGGAACAACATTACTGACCAAACATCATTCAGAACTGCTCTTGTTATGTACACACAATCTCGGCACGAAGGAACACACAACCCCACCGTGATCCCTCAGTTACTCAAAGCATGTGATTCTCTTGCCTTCCTTCACTACGTTAAGAGTTTACATGCAGAGTCCATCAAAGCAGGTTCAGACATCAACGTGTTTATTGGAACCGCAATTGTTGCAGCTTATGCAAAATGCGGCGTTGTTTTGGATGCACGCAAACTGTTTGATTGTATGCCTGAAAGAAATGTTGTTACTTGGAATGCAATGGTTGGTGGGTATTTGAGAAATGGTGACACTGATTCTGCTTTGATTGCTTTTGAGGAAATGCCGGCGAAAACAAGGGTGAGTTGGAGTCAGATGATTGGTGGGCTTGCTAAAAATGGTGATACTGTATCTGCTAGGGTGTTGTTTGATAAGGTTCCATGTGAGTTGAAGGATGTGGTGATATGGACTGTGATGGTTGATGGGTATGCTAAGAAAGGGGAAATGGAAGCTGCAAGAGAGGTTTTTGAGTTAATGCCAGAAAGGAATTATTTTGTTTGGTCATCTATGGTTTGTGGATATTGCAAGAAGGGCAGTGTCTTGGAGGCTGAGGCTATTTTTCGACAGATTCCAGTTCGGAATTTGGAGATTTGGAATTCTATGATTGCTGGCTATGTGCAGAATGGATTTGGTGAGAAAGCATTGCAGACTTTTGAGGAAATGAGAGTTGAAGGTTTTGAGCCAGATGAGTTCACTGTTGTTAGTGTTTTATCTGCTTGTGCTCAACTTGGAGACCTGCATATTGGCAAACAAATCCATAACATGATAGAATTTAAAGGAATGGTTGTGAACCAATTTGTTTTAAGTGGATTGGTTGACATGTATTCGAAATGTGGGGACTTGGTTAATGCAAGGTTGGTATTTGAAAGATGCAATGAGAGGAATGTTTTCTGCTGGAATGCTATGATTTCAGGTTTTGCTATCAATGGAAAATGCAAGGAGGTTCTTGAGTATTTGGGTAGGATGGAAGAGTCAAATATAAGACCTGATGCCGTCACATTTACTACAATACTCTCAGCTTGTGCTCATGCAGGTTTGGTGAGTGAAGCTTTGGAAGTAATATCTAAAATGGAGGCATATGGAATTGAAAGAGGCATCAGGCACTATGGATGCATAGTTGACCTCTTGGGGAGAGCAGGGAGGTTAAAGGAGGCATTTGAGTTTATAAAAAGAATGCCAGTTAAACCTAATGAAACAGTTTTGGGGTCAATGATTGGTGCTTGCTGGATTCATTCAGATATGAAATTGGCAGAACAAGTTATTAAGATGATTAGTGCAGACTCTGCTACATGTGATAATTCCCACAATGTGCTTCTGTCAAATATCTATGCAGCTTCAAAAAACTGGGAGAATGCTGAAATGATAAGGAGGAGCATGGTTGATGGAGGGTCTGAAAAGATACCAGGGTATAGTTCAATCATGCTTAGTAACTCTAATGTTGATTTAAGTATAAGTAAAGAAGTTTCACATCAAATGAACGGGCAAACTCCAATCTAA 1641 0.4004 MQHVTKIRGNREIFNSSNWSRSIRNNITDQTSFRTALVMYTQSRHEGTHNPTVIPQLLKACDSLAFLHYVKSLHAESIKAGSDINVFIGTAIVAAYAKCGVVLDARKLFDCMPERNVVTWNAMVGGYLRNGDTDSALIAFEEMPAKTRVSWSQMIGGLAKNGDTVSARVLFDKVPCELKDVVIWTVMVDGYAKKGEMEAAREVFELMPERNYFVWSSMVCGYCKKGSVLEAEAIFRQIPVRNLEIWNSMIAGYVQNGFGEKALQTFEEMRVEGFEPDEFTVVSVLSACAQLGDLHIGKQIHNMIEFKGMVVNQFVLSGLVDMYSKCGDLVNARLVFERCNERNVFCWNAMISGFAINGKCKEVLEYLGRMEESNIRPDAVTFTTILSACAHAGLVSEALEVISKMEAYGIERGIRHYGCIVDLLGRAGRLKEAFEFIKRMPVKPNETVLGSMIGACWIHSDMKLAEQVIKMISADSATCDNSHNVLLSNIYAASKNWENAEMIRRSMVDGGSEKIPGYSSIMLSNSNVDLSISKEVSHQMNGQTPI 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03714 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 378 412 IPR002885 -
Trre5g03714 546 Pfam PPR repeat 118 144 IPR002885 -
Trre5g03714 546 Pfam PPR repeat 90 117 IPR002885 -
Trre5g03714 546 Pfam PPR repeat 182 211 IPR002885 -
Trre5g03714 546 Pfam PPR repeat 416 441 IPR002885 -
Trre5g03714 546 Pfam PPR repeat 149 173 IPR002885 -
Trre5g03714 546 Pfam PPR repeat 214 241 IPR002885 -
Trre5g03714 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 242 276 IPR002885 -
Trre5g03714 546 Pfam E motif 459 521 IPR046848 -
Trre5g03714 546 Gene3D Tetratricopeptide repeat domain 312 541 IPR011990 GO:0005515
Trre5g03714 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
Trre5g03714 546 FunFam Pentatricopeptide repeat-containing protein 316 524 - -
Trre5g03714 546 NCBIfam pentatricopeptide repeat 345 379 IPR002885 -
Trre5g03714 546 NCBIfam pentatricopeptide repeat 182 211 IPR002885 -
Trre5g03714 546 NCBIfam pentatricopeptide repeat 245 278 IPR002885 -
Trre5g03714 546 NCBIfam pentatricopeptide repeat 118 144 IPR002885 -
Trre5g03714 546 NCBIfam pentatricopeptide repeat 214 242 IPR002885 -
Trre5g03714 546 NCBIfam pentatricopeptide repeat 380 411 IPR002885 -
Trre5g03714 546 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 31 145 IPR046960 GO:0003723|GO:0009451
Trre5g03714 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 150 IPR002885 -
Trre5g03714 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 180 214 IPR002885 -
Trre5g03714 546 Pfam PPR repeat family 243 289 IPR002885 -
Trre5g03714 546 Pfam PPR repeat family 342 390 IPR002885 -
Trre5g03714 546 Gene3D Tetratricopeptide repeat domain 24 143 IPR011990 GO:0005515
Trre5g03714 546 Gene3D Tetratricopeptide repeat domain 211 303 IPR011990 GO:0005515
Trre5g03714 546 Gene3D Tetratricopeptide repeat domain 144 210 IPR011990 GO:0005515
Trre5g03714 546 FunFam Pentatricopeptide repeat-containing protein chloroplastic 178 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03714 Trre-Chr5 37024558 37026198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03714 243 509 Glycoside Hydrolase AT3G49170 22.695 1.39e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03714 - - mtr:11417411 873.618