Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03672 ATGGTTGGGAAGGATAATCTGAAAACTGAGGATTTGAATTTGTGCTTTGAGAATCTTATGATGGTTGCTGGTGGTGGGAATGGAAGGAACATGAAAGTTGGTGTGATCACTGAATGGAAGGATATTCCTGTTGAGCTTTTGATGCAAATTCTGTCACTTGTGAATGATCAGACTGTTATTAGAGCTTCTGGAGTTTGTCGTGGATGGAGAGATTCTATTTACTTTGGTCTTTCTCGTTTATCACTCTCATGGTGTAACAAGAACATGAACAACTTGGTCCTATCTTTTGTTCCAAAGTTTGCAAAATTGCAAACACTAATCCTTCGTCAAGACAAGCCACAACTAGACGATAATGCTGTTGGGACTATTGCAAATTTCTGTCATGACCTACAGATTCTTGACCTCAGCAAAAGTTTCAAGCTCACCGATCGTTCACTGTATGCTATAGCCCATGGTTGTCGCGATCTCACAAAACTAAACATCAGTGGATGCTCAGCATTTAGTGACAATGCTCTGGCTTACCTTGCTGGTTTCTGTAGAAAACTGAAAGTTCTTAATCTCTGTGGATGTGTTAGAGCAGCCTCGGATACTGCACTTCAGGCTATTGGACATTATTGCAATCAGTTACAGTCTTTAAACCTCGGATGGTGTGATACAATTAGTGATGTTGGAGTGATGAGCTTAGCTGATGGATGTCCTGATTTAAGAACAGTTGACTTGTGTGGCTGTGTCCATATAACAGATGATAGTGTGATTGCTTTAGCAAACCGATGCCCTCACCTGAGGATGTGGGGATCAGTGAAAGGAGGAAATGATGAAGATGGTTTAAGGACTTTGAACATTAGCCAATGCACTGCGCTCACTCCTTCTGCTGTTCAGGCGGTTTGCGACTCATCCCCTGCTCTCCACACATGCTCAGGCAGGCATTCACTCATCATGAGTGGTTGCCTTAACTTGACTTCTGTTCATTGTGCTTGTGCTGTTCATGCGCACCGCGCGATCAACACTTTCCCTCATTCTGCTCATTGA 1029 0.4295 MVGKDNLKTEDLNLCFENLMMVAGGGNGRNMKVGVITEWKDIPVELLMQILSLVNDQTVIRASGVCRGWRDSIYFGLSRLSLSWCNKNMNNLVLSFVPKFAKLQTLILRQDKPQLDDNAVGTIANFCHDLQILDLSKSFKLTDRSLYAIAHGCRDLTKLNISGCSAFSDNALAYLAGFCRKLKVLNLCGCVRAASDTALQAIGHYCNQLQSLNLGWCDTISDVGVMSLADGCPDLRTVDLCGCVHITDDSVIALANRCPHLRMWGSVKGGNDEDGLRTLNISQCTALTPSAVQAVCDSSPALHTCSGRHSLIMSGCLNLTSVHCACAVHAHRAINTFPHSAH 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03672 342 Gene3D Ribonuclease Inhibitor 35 263 IPR032675 -
Trre5g03672 342 PANTHER UNCHARACTERIZED 79 306 - -
Trre5g03672 342 CDD F-box_AtSKP2-like 38 85 - -
Trre5g03672 342 Pfam F-box-like 40 73 IPR001810 GO:0005515
Trre5g03672 342 SMART LRR_CC_2 232 257 IPR006553 -
Trre5g03672 342 SMART LRR_CC_2 273 298 IPR006553 -
Trre5g03672 342 SMART LRR_CC_2 127 152 IPR006553 -
Trre5g03672 342 SMART LRR_CC_2 153 178 IPR006553 -
Trre5g03672 342 SMART LRR_CC_2 179 205 IPR006553 -
Trre5g03672 342 SMART LRR_CC_2 206 231 IPR006553 -
Trre5g03672 342 Pfam Leucine Rich repeat 232 255 IPR001611 GO:0005515
Trre5g03672 342 Pfam Leucine Rich repeat 206 229 IPR001611 GO:0005515
Trre5g03672 342 SUPERFAMILY RNI-like 75 262 - -
Trre5g03672 342 SUPERFAMILY F-box domain 37 73 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03672 Trre-Chr5 35849996 35852405 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03672 K03875 - gmx:100818928 597.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03672 5 35849996 35852405 Trre5g03672 5 35849996 35852405 ECH