Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03656 ATGGCAGCTACTTTGTTATTTAAAAGGTCTAGGACCTTATTAGTTCAAAATAAGCTATCCTTGTTGTTAGGAATAGGATCAATAACACCATTCATTAACCATCATCGCTTTAGATCATATTCTTCTTCTAAGCCATTTGTTGCATCATCATCCCGTTATGAATCTACCAAAGCACAAGCACAGTTGGAAGATTTTCAGCAACATGATGACCATGATGACCAGGTCATTGATTTCCCTGGAGGGAAAGTTGCATTCACTTCTGAAATGAGATTCATTTCCGACACTTCTCACAAAAGGGTTCCGTGCTATCGAGTCCTTGATGACGATGGTGAGCTCATGACACACACCAATCATGTTCAGGTTAGCAAAGAAATGGCTGTGAGGATGTATTCTGAGATGGTCACTCTTCAAACAATGGACAGTATATTCTATGAGGTGCAGAGGCAAGGAAGAATTTCCTTCTACCTCACCTCAATGGGTGAAGAAGCTATTAACATTGCATCAGCAGCTGCGCTTTCTTCCGATGATATTATCTTGCCTCAGTATCGGGAACCTGGAGTTCTGTTATGGCGTGGTTTTACGCTGCAACAATTTGCTCATCAATGCTTTGGAAACACAAATGATTTTGGTAAAGGAAGGCAAATGCCTATACACTACGGCTCTAACAAGCACAATTACTTCACAGTCTCATCGCCCATTGCAACACAACTTCCTCAAGCTGTAGGCGCTGCTTATTCGCTTAAAATGGACGGGAAAAGTGCTTGTGCAGTCACTTTTTGTGGGGATGGTGCTACTAGTGAGGGCGATTTCCATGCTGGTATGAATTTTGCAGCAGTAATGGAGGCACCGGTTATTTTTATCATTCGTAACAATGGATGGGCCATCAGTACCCCTGTCGAAGACCAATTTCGAAGTGATGGTATTGTGGTGAAAGGTCAAGCTTATGGCATATGGAGTATAAGAGTCGATGGAAATGATGCTCTTGCTGTTTATAGTGCAGTTCATACTGCTCGCGAAATTGCTATAAAAGAACAAAGACCGGTTTTAATTGAGGCTCTCAGCTATAGAGTAGGACACCACTCTACATCTGATGATTCAACAAAGTACAGGCCAACTGATGAGATTGAATATTGGAAGATGGAAAGAAGTCCTGTGAATAGATTCAAAAGATGGGTTGAAAAGAATGGTTGGTGGAGTGAAAAGGATGAATTGGTGCTTAGAAGCAGTGTTAGGAAGCAGTTAATGCACGCCATTCAAGTAGCGGAGAAAGCACAAAAACCTCCACTTGAGGACTTATTTACTGATGTATATGACCAACTTTCATCAAACCTTGAGGAGCAAGAAAGGCTACTTAGAAAAGACATTGAGAGGCATCCCAAAGATTACCCTTCTGATGTTCCTTTGTAG 1407 0.4158 MAATLLFKRSRTLLVQNKLSLLLGIGSITPFINHHRFRSYSSSKPFVASSSRYESTKAQAQLEDFQQHDDHDDQVIDFPGGKVAFTSEMRFISDTSHKRVPCYRVLDDDGELMTHTNHVQVSKEMAVRMYSEMVTLQTMDSIFYEVQRQGRISFYLTSMGEEAINIASAAALSSDDIILPQYREPGVLLWRGFTLQQFAHQCFGNTNDFGKGRQMPIHYGSNKHNYFTVSSPIATQLPQAVGAAYSLKMDGKSACAVTFCGDGATSEGDFHAGMNFAAVMEAPVIFIIRNNGWAISTPVEDQFRSDGIVVKGQAYGIWSIRVDGNDALAVYSAVHTAREIAIKEQRPVLIEALSYRVGHHSTSDDSTKYRPTDEIEYWKMERSPVNRFKRWVEKNGWWSEKDELVLRSSVRKQLMHAIQVAEKAQKPPLEDLFTDVYDQLSSNLEEQERLLRKDIERHPKDYPSDVPL 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03656 468 Coils Coil 437 457 - -
Trre5g03656 468 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 100 463 IPR029061 -
Trre5g03656 468 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL 66 466 - -
Trre5g03656 468 Gene3D - 71 466 - -
Trre5g03656 468 CDD TPP_E1_PDC_ADC_BCADC 129 421 - -
Trre5g03656 468 Pfam Dehydrogenase E1 component 132 428 IPR001017 GO:0016624
Trre5g03656 468 FunFam 2-oxoisovalerate dehydrogenase subunit alpha 71 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03656 Trre-Chr5 35441053 35453229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03656 7 305 Acyl Lipid Metabolism Gene Families AT1G21400 63.666 3.04e-139 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03656 K00166 - gmx:100796766 746.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03656 5 35441053 35453229 Trre5g03656 5 35441053 35453229 ECH