Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03640 ATGGCTAATAATGCTACTGCGTGTGCTGAGAGAGCAACTAGTGACTTGCTCATTGGACCAGATTGGGCAATCAACATAGAATTGTGTGATATCATTAACATGGACCCGAGGCAAGCAAAGGATGCATTGAAGATACTTAAGAAGCGTTTGGGCAGCAAAAATCCCAAAACACAGCTGCTGGCTCTTTTTGTACTGGAGACCCTTAGTAAAAACTGTGGTGAAAGTGTATTTCAGCAGATTGTTGAGCGTGATATATTGCATGAAATGGTTAAGATTGTGAAGAAGAAGCCGGACTTAAGTGTGAGGGAAAAGATACTGATTTTAATTGATGCATGGCAAGAAGCTTTTGGAGGACCAAGTGGAGTTTTCCCCCAATATTATGCAGCATATAATGAACTAAAGTCTGCTGGAGTTGAATTTCCACCAAGAGAAGAAAATAGTGTGCCATTCTTCACGCCTCCACAAACTCAGCCAATTGTTCATTCTGCTGTAGAATTTGATGATGCTGCTATTCAGGCTTCTCTTCAGTCAGATGCATCTGACCTTAGTGTACTGGAGATTAAAAATGCTCAAGGGTTAGCCGATGTTTTGACAGAAATGCTCAGTGCCTTGAATCCGAAAGACCCTGAGGGCGTGAAGGAGGAAGTGATCGTTGATCTTGTTGACCAGTGCCGTTCTTACCAGAAACGTGTCATGCTTCTTGTGAACAATACTGTGGATGAAGACCTTCTAGGTCAGGGACTGGCATTGAATGACAGCCTTCAGCGAGTACTCCGTCAGCACGACGATATTGCGAAAGGAACTGCTAATTCAGGTGCAAGAGAAGTAGAAACTCCAGTTCTGCCGCTTGTTAATGTAAACCAGGAAGATGATGACTCGGACGATGATTTTGGTCAATTAGCCCACAGGTCATCTCGAGATGCTCATGCACAGAATCGGAAACCAGAGCCAGTGAGGATAAACTCATTTATTCCTCCCCCACCAGCATCAAAGAAGCCAGTCTACTCAGGCACTGGCATGGTTGACTATCTTAGTGGTGATGCATACAAGGCAGAAGGATCCTTTGAAAACTCAGAACCAACTTCATATGCAGCTCATAATCATTCTAGCCCTAATCCGGCCCCATCAACTACTCCAACAGAGTCTTCAACCCGTCCTCATGCAACTACCACCTCATCACCAGTTTTTGACAGGCAGCCTATATATGATGAGCCGTCTCCCATGAAGTCTTCAGAACAGCTGCCTCCAGCTCCTTGGGATACGCAAGCTCCTGTTGTTATTCCACCCCCACCTTCAAAGTATAATCAGAGACAACAGTTTTTTGAGCAAAAAGTTTCATCCCATTCAAGTAATGGGTCAAGTTCATCTTCTGACAGCTTGGTGGGACAAACTCAAAATCTCTCTCTGAATTCATCCACCCCAACCAAAGAACAGAAGCCAGAAGATGCCCTTTTCAAAGATCTGGTCGATTTTGCAAAATCGAAAACCTCTTCATCTTCCAAACCCAATAATAGGTCGTATTGA 1524 0.4403 MANNATACAERATSDLLIGPDWAINIELCDIINMDPRQAKDALKILKKRLGSKNPKTQLLALFVLETLSKNCGESVFQQIVERDILHEMVKIVKKKPDLSVREKILILIDAWQEAFGGPSGVFPQYYAAYNELKSAGVEFPPREENSVPFFTPPQTQPIVHSAVEFDDAAIQASLQSDASDLSVLEIKNAQGLADVLTEMLSALNPKDPEGVKEEVIVDLVDQCRSYQKRVMLLVNNTVDEDLLGQGLALNDSLQRVLRQHDDIAKGTANSGAREVETPVLPLVNVNQEDDDSDDDFGQLAHRSSRDAHAQNRKPEPVRINSFIPPPPASKKPVYSGTGMVDYLSGDAYKAEGSFENSEPTSYAAHNHSSPNPAPSTTPTESSTRPHATTTSSPVFDRQPIYDEPSPMKSSEQLPPAPWDTQAPVVIPPPPSKYNQRQQFFEQKVSSHSSNGSSSSSDSLVGQTQNLSLNSSTPTKEQKPEDALFKDLVDFAKSKTSSSSKPNNRSY 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03640 507 SMART VHS_2 5 137 IPR002014 GO:0035091|GO:0043130
Trre5g03640 507 SUPERFAMILY GAT-like domain 145 267 - -
Trre5g03640 507 SUPERFAMILY ENTH/VHS domain 3 142 IPR008942 -
Trre5g03640 507 Gene3D - 2 158 IPR008942 -
Trre5g03640 507 MobiDBLite consensus disorder prediction 352 484 - -
Trre5g03640 507 MobiDBLite consensus disorder prediction 296 314 - -
Trre5g03640 507 MobiDBLite consensus disorder prediction 432 478 - -
Trre5g03640 507 MobiDBLite consensus disorder prediction 286 335 - -
Trre5g03640 507 Gene3D - 175 273 IPR038425 -
Trre5g03640 507 PANTHER TOM1-LIKE PROTEIN 1 502 IPR044836 GO:0035091|GO:0043130|GO:0043328
Trre5g03640 507 CDD GAT_GGA-like_plant 186 264 - -
Trre5g03640 507 ProSiteProfiles GAT domain profile. 177 266 IPR004152 GO:0035091|GO:0043130
Trre5g03640 507 PIRSF TOM1 1 507 IPR014645 -
Trre5g03640 507 MobiDBLite consensus disorder prediction 355 397 - -
Trre5g03640 507 ProSiteProfiles VHS domain profile. 12 141 IPR002014 GO:0035091|GO:0043130
Trre5g03640 507 CDD VHS 5 135 - -
Trre5g03640 507 FunFam TOM1-like protein 2 4 151 - -
Trre5g03640 507 Pfam VHS domain 9 118 IPR002014 GO:0035091|GO:0043130
Trre5g03640 507 Pfam GAT domain 193 267 IPR004152 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03640 Trre-Chr5 35132808 35137778 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03640 - - gmx:100792343 779.245