Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03610 ATGACATACTTGGAGGAAATAAGAGAGTCCCAAAGAGCCAATGGACCAGCTACCATCCTAGCAATTGGTACAGCAACTCCATCCAATTGCATTTACCAATCTGATTTTACCGATTATTACTTTCGAGTTACCAAAACTGAACACATGACTCAACTCAAGGCCAAATTGAAGCGTATATGTGAGAAATCAATGATAAAAAAACGATACATACACCTAACAGAAGAAATCCTTAAAGAAAACCCCAACATATCTACTTATGAAGATCCATCGCTCGATGCACGCCAAGACATGCTAATTAAAGAAGTACCAAAGCTAGGCGAAAAAGCAGCATCAAAAGCAATAAAAGAATGGGGAAGACCAAAATCCGAGATAACTCATCTCATATTTTGTTCAACTTCCGGCGTCGACATGCCTGGTGCTGATTATCAACTCATCAAACTCTTAAATCTAAACCCATCCATAAAGAGGTTCATGTTATATCACCAAGGTTGTTTCGCTGGTGGAACTGTGCTTCGTCTTGCAAAAGATCTCGCTGAGAATAACGTTGGTGCACGTGTCCTTGTTGTGTGCTCTGAAATAACTGTGGTTACTTTTCGTGGGCCCAATGAAAATCACTTGGATTCCTTAGTTGGACAAGCACTATTTGGTGATGGTGCTTCGTCTGTGATTGTTGGATCAGACCCTGATAGAACAATCGAACGACCATTATTTCATATCGTTTCGGCTTCAGAGACGATTTTACCAAACTCTGAAGGTGCAATTGAAGGACATTTGCGTGAAGTGGGGCTCACTTTTCATCTGAAAGACAATGTTCCAAATTTGATTGGTGAAAACATTGAGAAGAGTCTAGAAGAAACTTTTCATCCGTTAGGGATTAATGATTGGAATTCATTGTTTTGGATAACGCACCCTGGCGGTCCGGCGATATTGAAGAGGATTGAAGAAAAGGTTGGACTGAATTCAGAAAAACTTAATGCAACTAAACATGTTTTGGGCGAATATGGAAACATGTCAAGTGCTTGTGTGATATTTATATTGGATGAAATGAGGAGAAAGTCTGTGGAGGAAGGAAAATTGACTACTGGTGATGGATTGAAATGGGGTGTTTTGTTTGGATTTGGTCCTGGCTTGACTATGGAAACTATTGCTTTGCATAGCGCCAACATAGATCACCACTACAAGCTAGCTTAG 1191 0.4013 MTYLEEIRESQRANGPATILAIGTATPSNCIYQSDFTDYYFRVTKTEHMTQLKAKLKRICEKSMIKKRYIHLTEEILKENPNISTYEDPSLDARQDMLIKEVPKLGEKAASKAIKEWGRPKSEITHLIFCSTSGVDMPGADYQLIKLLNLNPSIKRFMLYHQGCFAGGTVLRLAKDLAENNVGARVLVVCSEITVVTFRGPNENHLDSLVGQALFGDGASSVIVGSDPDRTIERPLFHIVSASETILPNSEGAIEGHLREVGLTFHLKDNVPNLIGENIEKSLEETFHPLGINDWNSLFWITHPGGPAILKRIEEKVGLNSEKLNATKHVLGEYGNMSSACVIFILDEMRRKSVEEGKLTTGDGLKWGVLFGFGPGLTMETIALHSANIDHHYKLA 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03610 396 SUPERFAMILY Thiolase-like 235 386 IPR016039 GO:0016746
Trre5g03610 396 PIRSF PKS_III 3 389 IPR011141 GO:0009058|GO:0016747
Trre5g03610 396 FunFam Chalcone synthase 1 236 388 - -
Trre5g03610 396 Pfam Chalcone and stilbene synthases, N-terminal domain 5 228 IPR001099 -
Trre5g03610 396 CDD CHS_like 16 384 - -
Trre5g03610 396 ProSitePatterns Chalcone and stilbene synthases active site. 156 172 IPR018088 GO:0009058|GO:0016746
Trre5g03610 396 Gene3D - 1 235 IPR016039 GO:0016746
Trre5g03610 396 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 5 387 IPR011141 GO:0009058|GO:0016747
Trre5g03610 396 SUPERFAMILY Thiolase-like 1 232 IPR016039 GO:0016746
Trre5g03610 396 Gene3D - 236 390 IPR016039 GO:0016746
Trre5g03610 396 FunFam Chalcone synthase 2 1 235 - -
Trre5g03610 396 Pfam Chalcone and stilbene synthases, C-terminal domain 239 386 IPR012328 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03610 Trre-Chr5 34858263 34862265 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03610 109 374 Miscellaneous Gene Families AT1G25450 20.539 1.37e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03610 K00660 - nnu:104591893 630.557