Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03565 ATGGCCACACTCTCACACCCATTCCCAACCTTCTTCTCCATTCAGAGAACGACTTCAACAACCCACCCCAATGCCTTCTTCATTGGATCTCCTCCTTCCTTCACACGCCTCCCACAACGTTCTTTCACACCGACATTCATTGCCGCTGCATCCATTAAGGAAAATCTTGGTCGCATTCATAAGACTTTCACTGACTTCACTAGCTTGAACCACTGGGTAGTTAATGACTACTTCCGATTAGTGAACTCTGTCAATGCCTTTGAGCCTCGGATTCAGGCACTATCCGATGACCAGTTGGCTGCCAAAACCGAGGAGTTTCGCCTCCGGCTCAAGCGAGGGGAGACACTTGCGGATATCCAAGCTGAGGCGTTCGCTGTTGTTCGTGAGGCTGCCAGAAGAAAACTTGGAATGCGCCATTTTGATGTTCAGATTATTGGTGGAGCTGTGCTGCATGATGGGTCCATTGCTGAGATGAAAACGGGAGAGGGGAAAACCTTAGTCTCCACACTGGCAGCATATCTTAATGCTCTGACCGCTGAGGGTGTCCATGTTGTAACTGTGAATGACTATTTAGCTAAACGCGATGCTGAATGGATGGGGCGTGTTCATCGTTTCTTATGTCTTTCTGTTGGTCTTATTCAGAAGGGGATGAAATCTGAAGAACGGAGATTCAACTATAGATGTGATATAACATATACCAATAATTCGGAGCTTGGCTTTGATTACTTGAGGGATAATCTTGCCGGAAATAGCGAACAGCTTGTGATGAGATGGCCAAAGCCATTTCATTTTGCTATTGTTGATGAGGTGGATTCAGTCTTGATAGATGAGGGAAGAAATCCGTTGTTAATCAGTGGTGAGGCTAGTCAAGAGGCTGCACGGTACCCTGTTGCTGCAAAAGTGGCCGAATTGCTTACACTGGACATTCATTACAAAGTGGAACTCAAAAATAATTCAGTGGAGTTGACCGAGGAAGGAATTACACTTGCTGAAATGGCTCTAGAAACAAATGACCTTTGGGATGAAAATGATCCCTGGGCTAGATTTGTGATGAATGCTTTAAAAGCTAAAGAATTCTATCGCCGAGATGTGCAATACATTGTCAGAGATGGAAAGGCTTTAATTATAAATGAGCTGACAGGAAGAGTTGAAGAGAAAAGGAGATGGTCTGAGGGGATTCACCAGGCTGTGGAGGCAAAAGAAGGTTTGAAGATTCAGGCAGATTCTGTTGTCGTGGCACAAATCACATACCAATCATTATTCAAGCTTTATCCAAAATTGTCAGGAATGACTGGAACTGCAAAAACAGAAGAGAAAGAGTTCTTAAAAATGTTCCAAACGCCAGTAATTGAAGTGCCCACAAATCTTCCTAATATTCGCAAAGACTTGCCTGTTCAAGCATTTGCTACTGCTCGTGGGAAATGGGAGCAAGTTCGCCGAGAAGTTGAAGATATGTTTAGACAAGGGCGTCCGGTCTTGGTTGGGACAACTAGTGTAGAAAATTCTGAACTTTTGGCTGGTCTGCTTAGGGAGTGGAATATTCCCCATAATGTTCTGAATGCTCGACCCAAGTATGCTGCGAGAGAAGCTGAAATTGTTGCACAGGCAGGACGGAAACATGCCATTACAATATCTACAAATATGGCAGGCAGGGGCACAGATATAATCCTTGGAGGAAATCCAAAAATGCTTGCCAGAGAAATTATAGAGGATAGTGTGGTTCCTTTTTTGACACGGGAGGATCCAAATAGTGAACTTGCCAGTGAGGCCATTTCTGAAAAGATGCTTCCAAAGATAAAGGTAGGATCATCATCATTAGCCTTACTGGCTAAGACAGCCTTAATGGCAAAATATGTATCGAAAAGTGAGGGTAAAAGTTGGACGTATCAGAAGACTATATCTCTTATCTTGGAGTCTGTTGAATTGAGTCTTTCGTATAGTTTGAAAGAGCTTGAGGAGCTTGCCAATGAAGAATCCGAGTTCTACCCACTTGGTCCAACAGTAGCACTTGCTTATCTGGCAGTTTTAAAGGACTGTGAAGAACACTGTTTGCATGAAGGGTCTGAGGTAAAAAGGCTTGGGGGTCTTCATGTGATTGGTACATCTCTACACGAGTCCCGAAGAATAGACAACCAGCTTCGCGGCAGAGCAGGAAGGCAGGGGGATCCAGGGTCAACACGGTTTATGGTCAGCTTGCAGGATGAGATGTTTCAAAAGTTCAATTTTGACACTCAATGGGCTGTTCGAATTATATCAAAGATTACAAACGATGAGGATCTGCCAATTGAAGGTGGTGCCATTGTGAAACAGCTCTTGGCATTGCAAATCAGTGCAGAAAAGTTCTTCTTCGGCATAAGAAAGAACCTCGTTGAGTTTGATGAAGTATTGGAGGTGCAACGAAAACATGTTTATGATCTAAGGCAGTTAATCTTAACAGGAGATGACGAAAGCTGTTCCCAACACATATTGCAGTACATGCAAGCAGTGGTGGATGAGATTATCTTTAGTAACATTGATCCATTGAAGCATCCTCGTAGTTGGGGTTTGAGTAATCTCTTGAAAGAGTTCAAGACAATTGGTGGAAAGCTGTTGCATGCAGAATCATTTAGAGGGATTAATGATGACACTTTACTAACTTCACTTGGGCAACTGAATGAAGTGAATTCAGTCGATGTTGTCTACTTTTGCCTTCCAAATTTGCCAGCACCTCCAAATGCTTTCAGGGGTATTCGCAGGAAGAGCTCTTCATTAAGACGATGGCTTGCTATTTGCACTGATGATATAACTGAGAACGGGAAGTATCGGACAACTTCTAATATCCTTCGCAAGTATCTTGGAGATTTTCTAATTGCTTCGTATTTAGATGTCGTTGAAGAGTCTGGTTATGATGAGAGACATGTAAAAGAGATTGAGAGAGCTGTTCTTTTGAAAACTGTTGACTGTTTCTGGAGAGATCATCTTGTAAACATGAATAGGCTCAGCTCTGCGGTGAATGTTAGGAGCTTCGGCCACAGAAATCCTCTAGAAGAATACAAAATTGATGGTTGTCGGTTTTTCATCTCAATGCTCTGTGCAACTCGAAGGTTAACTGTAGAAGCACTTTTACGACATTGGACATCTCCGATGGAATCCCAAGAATTATTTTTATAA 3150 0.4292 MATLSHPFPTFFSIQRTTSTTHPNAFFIGSPPSFTRLPQRSFTPTFIAAASIKENLGRIHKTFTDFTSLNHWVVNDYFRLVNSVNAFEPRIQALSDDQLAAKTEEFRLRLKRGETLADIQAEAFAVVREAARRKLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTAEGVHVVTVNDYLAKRDAEWMGRVHRFLCLSVGLIQKGMKSEERRFNYRCDITYTNNSELGFDYLRDNLAGNSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASQEAARYPVAAKVAELLTLDIHYKVELKNNSVELTEEGITLAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRDGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQTPVIEVPTNLPNIRKDLPVQAFATARGKWEQVRREVEDMFRQGRPVLVGTTSVENSELLAGLLREWNIPHNVLNARPKYAAREAEIVAQAGRKHAITISTNMAGRGTDIILGGNPKMLAREIIEDSVVPFLTREDPNSELASEAISEKMLPKIKVGSSSLALLAKTALMAKYVSKSEGKSWTYQKTISLILESVELSLSYSLKELEELANEESEFYPLGPTVALAYLAVLKDCEEHCLHEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFNFDTQWAVRIISKITNDEDLPIEGGAIVKQLLALQISAEKFFFGIRKNLVEFDEVLEVQRKHVYDLRQLILTGDDESCSQHILQYMQAVVDEIIFSNIDPLKHPRSWGLSNLLKEFKTIGGKLLHAESFRGINDDTLLTSLGQLNEVNSVDVVYFCLPNLPAPPNAFRGIRRKSSSLRRWLAICTDDITENGKYRTTSNILRKYLGDFLIASYLDVVEESGYDERHVKEIERAVLLKTVDCFWRDHLVNMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLCATRRLTVEALLRHWTSPMESQELFL 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03565 1049 Gene3D - 457 763 IPR027417 -
Trre5g03565 1049 PRINTS SecA protein signature 173 183 IPR000185 GO:0005524|GO:0006605|GO:0006886
Trre5g03565 1049 PRINTS SecA protein signature 119 143 IPR000185 GO:0005524|GO:0006605|GO:0006886
Trre5g03565 1049 PRINTS SecA protein signature 416 433 IPR000185 GO:0005524|GO:0006605|GO:0006886
Trre5g03565 1049 PRINTS SecA protein signature 157 171 IPR000185 GO:0005524|GO:0006605|GO:0006886
Trre5g03565 1049 PRINTS SecA protein signature 453 466 IPR000185 GO:0005524|GO:0006605|GO:0006886
Trre5g03565 1049 PRINTS SecA protein signature 379 401 IPR000185 GO:0005524|GO:0006605|GO:0006886
Trre5g03565 1049 PRINTS SecA protein signature 226 246 IPR000185 GO:0005524|GO:0006605|GO:0006886
Trre5g03565 1049 NCBIfam preprotein translocase subunit SecA 84 858 IPR000185 GO:0005524|GO:0006605|GO:0006886
Trre5g03565 1049 CDD DEXDc_SecA 98 454 - -
Trre5g03565 1049 Hamap Protein translocase subunit SecA [secA]. 58 1040 IPR000185 GO:0005524|GO:0006605|GO:0006886
Trre5g03565 1049 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 145 308 IPR014001 -
Trre5g03565 1049 FunFam Preprotein translocase SecA subunit 288 408 - -
Trre5g03565 1049 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 52 1047 IPR000185 GO:0005524|GO:0006605|GO:0006886
Trre5g03565 1049 Gene3D - 79 455 IPR027417 -
Trre5g03565 1049 FunFam Protein translocase subunit SecA 766 886 - -
Trre5g03565 1049 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 457 745 IPR027417 -
Trre5g03565 1049 FunFam Protein translocase subunit SecA 77 298 - -
Trre5g03565 1049 FunFam Protein translocase subunit SecA 908 1037 - -
Trre5g03565 1049 Pfam SecA Wing and Scaffold domain 761 1036 IPR011116 GO:0016020|GO:0017038
Trre5g03565 1049 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 455 IPR027417 -
Trre5g03565 1049 CDD SF2_C_secA 460 731 IPR044722 -
Trre5g03565 1049 Gene3D Helical scaffold and wing domains of SecA 903 1040 - -
Trre5g03565 1049 SUPERFAMILY Helical scaffold and wing domains of SecA 767 1047 IPR036266 -
Trre5g03565 1049 SUPERFAMILY Pre-protein crosslinking domain of SecA 286 407 IPR036670 GO:0016020|GO:0017038
Trre5g03565 1049 SMART SecA_PP_bind_2 287 398 IPR011130 GO:0016020|GO:0017038
Trre5g03565 1049 SMART SecA_DEAD_2 63 442 IPR011115 GO:0005524|GO:0016020|GO:0017038
Trre5g03565 1049 Pfam SecA DEAD-like domain 69 441 IPR011115 GO:0005524|GO:0016020|GO:0017038
Trre5g03565 1049 ProSiteProfiles SecA family profile. 59 763 IPR014018 -
Trre5g03565 1049 Gene3D Helical scaffold and wing domains of SecA 766 882 - -
Trre5g03565 1049 Gene3D - 288 408 - -
Trre5g03565 1049 ProSitePatterns SecA family signature. 542 557 IPR020937 GO:0006605|GO:0006886|GO:0016020
Trre5g03565 1049 Pfam SecA preprotein cross-linking domain 294 398 IPR011130 GO:0016020|GO:0017038
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03565 Trre-Chr5 33793495 33819761 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03565 K03070 - gmx:100793437 1761.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03565 5 33793495 33819761 Trre5g03565 5 33793495 33819761 ECH