Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03554 ATGGTTTGTGCGGGGTGTGATCCTGATATTGTTACTTATGGTATAATGGTTGATATTCTTTGTAAGGCTGGAAGGGTTGATGAAGCTGTTGAGGTTGTCAAGGAAATGATTGATAACAATTGCATGCCTACGTCGTTTATTTATAGTGTACTTGTTCATACGTATGGAGTGGAGAATCGGATTGAGGATGCGATTGATGCATTCATGGAAATGGAAAGGAATGGAATTGATGCCGAAGTTGTGGTATATAATGCCTTGATAGGTGCTTTTTGTAAGGCAAACAAATTAAAAAATGTGTATCGGGTGTTGAAAGAGATGGAACGCAATGGTATTGCCCCCAATTCAAGGACCTGCAATGTTATCATGAGCAGCTTGATTAGTCGGGGAGAGACTGATAAAGCTTTTAGTGTCTTCCGCCGGATGATTAAGTTGTGTGAACCGGATGCTGACACCTATACAATGCTGATAAAGATGTTTTGTGCGAAAAATGAAGTGGAGATGGCTCTAAAAATATGGAAGTATATGAAGTCAAAGCATTTTGTCCCAAGCTTGCACACCTTTTCTACTCTTATCAATGGATTGTGTGCAAAGGGAAATGTTATGAAAGCTTGTATTTTACTCGAAGAGATGATAGAGAAGGGAATTCGACCATCACGTATTACATTTGGGAAGTTAAGACAGTTACTTATAAAGGAAGGCAGAGAGGATGTTCTCAAATTTCTGCATGAGAAAATAAATATTCTTGTTAAGGAACCTTTTCAAGACAGTTGCAGTTTTAACCATCCGTTTGGAAAGGATATGCCTGATTATCTTGGATGGAGTTGGAGTGCAGAAAAACCTACAGGCATAGTTTGTCTCTTTAAGAACTGTCTGAACTGCATCTTTGGAAGGATATTGGATTTTTAA 906 0.3852 MVCAGCDPDIVTYGIMVDILCKAGRVDEAVEVVKEMIDNNCMPTSFIYSVLVHTYGVENRIEDAIDAFMEMERNGIDAEVVVYNALIGAFCKANKLKNVYRVLKEMERNGIAPNSRTCNVIMSSLISRGETDKAFSVFRRMIKLCEPDADTYTMLIKMFCAKNEVEMALKIWKYMKSKHFVPSLHTFSTLINGLCAKGNVMKACILLEEMIEKGIRPSRITFGKLRQLLIKEGREDVLKFLHEKINILVKEPFQDSCSFNHPFGKDMPDYLGWSWSAEKPTGIVCLFKNCLNCIFGRILDF 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03554 301 Gene3D Tetratricopeptide repeat domain 106 259 IPR011990 GO:0005515
Trre5g03554 301 Gene3D Tetratricopeptide repeat domain 1 105 IPR011990 GO:0005515
Trre5g03554 301 Pfam PPR repeat 47 76 IPR002885 -
Trre5g03554 301 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 48 243 - -
Trre5g03554 301 NCBIfam pentatricopeptide repeat 117 143 IPR002885 -
Trre5g03554 301 NCBIfam pentatricopeptide repeat 151 183 IPR002885 -
Trre5g03554 301 NCBIfam pentatricopeptide repeat 81 114 IPR002885 -
Trre5g03554 301 NCBIfam pentatricopeptide repeat 185 218 IPR002885 -
Trre5g03554 301 NCBIfam pentatricopeptide repeat 11 44 IPR002885 -
Trre5g03554 301 NCBIfam pentatricopeptide repeat 47 76 IPR002885 -
Trre5g03554 301 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 183 217 IPR002885 -
Trre5g03554 301 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 44 78 IPR002885 -
Trre5g03554 301 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 144 IPR002885 -
Trre5g03554 301 SUPERFAMILY HCP-like 19 225 - -
Trre5g03554 301 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 148 182 IPR002885 -
Trre5g03554 301 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 113 IPR002885 -
Trre5g03554 301 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 9 43 IPR002885 -
Trre5g03554 301 Pfam PPR repeat 5 36 IPR002885 -
Trre5g03554 301 Pfam PPR repeat family 80 125 IPR002885 -
Trre5g03554 301 Pfam PPR repeat family 147 195 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03554 Trre-Chr5 33334242 33335387 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03554 1 243 Glycosyltransferase AT1G05670 30.612 3.44e-33 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03554 - - gmx:100790096 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03554 5 33334242 33335387 Trre5g03554 5 33334242 33335387 ECH