Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03523 ATGCCAGCTTCTCCTTCAGATAATCGAACCAAATGGAGAAAACGGAAGAGAGAATCACAAATCACGAAACGTCAACAGAAGCATCAGGAGGAAGAAGAAGAAGACGAAGAAGAAAACCTCAATGCCGAAGAAGACAACGAACGCGACTATGATTCAGAGGATCAAAACAATCAAAACCACCCTAATTCTCAACCACAACAAGAAATCGAGATTCTATCCGATCACGGTGTTCAGATTTCGCATTTTCCAGTGGTTATTAAGCGTGCTGTTAATCGTCCTCATTCGTCTGTAACTGCAATTGTTGCTCTTGAACGAGCTATGGAGTTGGGAGATAGCAAAGGTCAGCTTCAGAATCAGAATCCTCCGTTTCTGGAGAATATTTCTCATGGCCAGCTTCAAGCGTTATCGTCTGTTCCTTCTGATAGTCTCGCTTTGGATCAGGATCGTGCTGATTCGTCTTATGTTATCACTCCACCACCTATTTTGGAAGGTCGCGGTGTTGTTAAACGCTTTGGAAGCAGGGTTCTTGTGCTTCCAATGCATTCAGATTGGTTTTCACCTGGAACTGTGCATCGGTTAGAGAGACAAGCAGTGCCTCATTTCTTTTCAGGGAAAACGCAGGATCTTAGTCCTGAAAAGTACATGGAATGCAGGAACTATATTGTTTCACTATATATGGAGGAGCCGCGGAAAAGGATTACTGCCTCGGATTGCCAGGGATTGCAGGTTGGGGTTGATCATGAAGATTTGACTCGAATTGTAAGGTTTCTTGACCATTGGGGAATTATCAATTACTGTGCCCGGATGCCAAGTCACGAGCCGCCTCCAAATGCTGTGTCGTGCTTGAAGGAGGATACTGGCAGAGAGCTTCGCGTGCCATCAGAGGCCTTGAAGTCTATAGATAGTTTGATCAAATTTGATAAGCCCAACTGTAAGCTCAAAGTAGAAGAAGTTTATTCACCATCGACAACAAATAGCTCTGATGTCTCTGATCTGGACGGCAGAATAAGAGAGCACTTGTCTGAAAATCATTGCAATTATTGTTCTTGTCCTCTTCCTGCTGTATACTATCAGTCTCAAAAAGAGGTTGATATTTTACTTTGCACTGATTGCTTTCATGATGGGAAATTTGTCGTTGGTCATTCAAGTATAGATTTTATAAGGATGGACTCAGCAAGGGATTATGGTGAATTAGATGGGGAAAGTTGGACTGATCAAGAGACTTTGTTGCTGCTTGAAGCAGTGGAGATTTACCATGAGAATTGGAATGAAATTGCCGACCATGTTGGTACCAAGTCAAAAGCACAATGCATTCTTCATTTTCTTCGTCTACCCATGGAAGACGGAAAATTGGAAAATATCAATGTTCCTAGCATGTCCGTGTCATCCAATGTGATGAATAAAGATGATAATGGAAGATCCCATCATTACTCAAACGGAGATTCTGCAGGACCTGTCCATCAAATCAGAGATTCTGACAGCCGCCTGCCTTTTGCTAACTCTGGAAATCCTGTTATGGCTCTGGTTGCCTTTTTAGCATCTGCGGTTGGACCAAGAGTAGCAGCTTCTTGTGCTCACGCAGCATTATCGGTATTGTCAGAGGATAACACTGGCTCCCAGACGGAAGCATCAGGACATGATAATAGGACAAATCCAGAAAACATGCATTGTAGAGATGGTGGCTCCCGTGGAGAAACTGCAATTTCAAATAATCATAATGAGGATAAGGCAAAAGCACCTTGTTCGCGGGATCAAACTGAGGGTAGGACAACCCCACTCTCTGCTGAAAAAGTTAAAGATGCAGCTAAAGCAGGTCTCTCTGCTGCAGCTATGAAAGCTAAATTGTTTGCTGATCATGAAGAACGAGAAATTCAGAGATTGTGTGCTAATATAATCAATCATCAGTTGAAAAGATTGGAATTGAAGCTGAAACAATTTGCAGAAATTGAAACATTGTTGATGAAGGAATGTGAGCAAGTGGAAAGAGCAAAGCAGAGGTTTGCTGCTGAGCGTACCCGCGTTATATCGGCACGTTTTGGAACTGCAGGAACCATGCCCGCGATGAATGCATCAGGTGTTGGTCCTTCAATGTCTAGTAATGGCAATAATAGGCCACAAATGATCTCTGCTTCTCCCTCACAGCCCAGCATCTCAGGGTATGGCAACAACCAACAAGTTCATCCACACATGTCCTTTTCCCCAAGACCTTCGATGTTTGGGTTGGGGCAAAGGTTACCCCTATCTATGATTCAACAATCACAATCAGGTTCTTCAGCTCCCATGTTCAATGCCCCTAGTAATGTGCAACCCGGTACCAGTCATCCATTGTTGAGGCCCGTGTCAGGAACTAATTCTGGTTTAGGATAA 2367 0.4347 MPASPSDNRTKWRKRKRESQITKRQQKHQEEEEEDEEENLNAEEDNERDYDSEDQNNQNHPNSQPQQEIEILSDHGVQISHFPVVIKRAVNRPHSSVTAIVALERAMELGDSKGQLQNQNPPFLENISHGQLQALSSVPSDSLALDQDRADSSYVITPPPILEGRGVVKRFGSRVLVLPMHSDWFSPGTVHRLERQAVPHFFSGKTQDLSPEKYMECRNYIVSLYMEEPRKRITASDCQGLQVGVDHEDLTRIVRFLDHWGIINYCARMPSHEPPPNAVSCLKEDTGRELRVPSEALKSIDSLIKFDKPNCKLKVEEVYSPSTTNSSDVSDLDGRIREHLSENHCNYCSCPLPAVYYQSQKEVDILLCTDCFHDGKFVVGHSSIDFIRMDSARDYGELDGESWTDQETLLLLEAVEIYHENWNEIADHVGTKSKAQCILHFLRLPMEDGKLENINVPSMSVSSNVMNKDDNGRSHHYSNGDSAGPVHQIRDSDSRLPFANSGNPVMALVAFLASAVGPRVAASCAHAALSVLSEDNTGSQTEASGHDNRTNPENMHCRDGGSRGETAISNNHNEDKAKAPCSRDQTEGRTTPLSAEKVKDAAKAGLSAAAMKAKLFADHEEREIQRLCANIINHQLKRLELKLKQFAEIETLLMKECEQVERAKQRFAAERTRVISARFGTAGTMPAMNASGVGPSMSSNGNNRPQMISASPSQPSISGYGNNQQVHPHMSFSPRPSMFGLGQRLPLSMIQQSQSGSSAPMFNAPSNVQPGTSHPLLRPVSGTNSGLG 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03523 788 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 402 450 IPR017930 -
Trre5g03523 788 SUPERFAMILY Homeodomain-like 400 453 IPR009057 -
Trre5g03523 788 MobiDBLite consensus disorder prediction 534 598 - -
Trre5g03523 788 MobiDBLite consensus disorder prediction 751 788 - -
Trre5g03523 788 MobiDBLite consensus disorder prediction 462 495 - -
Trre5g03523 788 MobiDBLite consensus disorder prediction 31 51 - -
Trre5g03523 788 SMART sant 399 447 IPR001005 -
Trre5g03523 788 MobiDBLite consensus disorder prediction 1 66 - -
Trre5g03523 788 Pfam Myb-like DNA-binding domain 402 444 IPR001005 -
Trre5g03523 788 ProSiteProfiles Zinc finger ZZ-type profile. 340 394 IPR000433 GO:0008270
Trre5g03523 788 ProSiteProfiles Myb-like domain profile. 402 445 IPR001005 -
Trre5g03523 788 Coils Coil 23 53 - -
Trre5g03523 788 Gene3D - 399 449 - -
Trre5g03523 788 Gene3D - 182 269 IPR036388 -
Trre5g03523 788 ProSiteProfiles SANT domain profile. 398 449 IPR017884 -
Trre5g03523 788 MobiDBLite consensus disorder prediction 534 548 - -
Trre5g03523 788 SUPERFAMILY Homeodomain-like 175 268 IPR009057 -
Trre5g03523 788 Pfam SWIRM domain 179 265 IPR007526 GO:0005515
Trre5g03523 788 MobiDBLite consensus disorder prediction 569 583 - -
Trre5g03523 788 ProSiteProfiles SWIRM domain profile. 176 274 IPR007526 GO:0005515
Trre5g03523 788 PANTHER SWI/SNF COMPLEX-RELATED 59 678 - -
Trre5g03523 788 Pfam SWIRM-associated region 1 604 680 IPR032451 -
Trre5g03523 788 CDD SANT 402 444 IPR001005 -
Trre5g03523 788 FunFam SWI/SNF complex subunit SMARCC2 isoform C 399 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03523 Trre-Chr5 32789938 32797781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03523 345 441 EF-hand Containing Proteins AT3G07740 34.906 1.24e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03523 K11649 - gmx:100780440 1243.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03523 5 32789938 32797781 Trre5g03523 5 32789938 32797781 ECH