Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03521 ATGACAAAGAGAAAAAGATCCCCCAAATCACTCCCTCCTCCACCTTCAACCCCTCCAACACCCCAAACCCAAACCCGCCACTCCACCAACATCTCTAAATCCCGGGTATGGATCCCTCTAAACATAACCCGACAAGAGCTCTCACTACCCCTCACATTCCCCACCGGCCAAACCTTCCGTTGGAAAAACACCGCTCCTTCCCAATACACTGGCGTCATTGGCCCCCACCTCGTTTCCCTCAAACACCTCCAAAACGGCGACGTATGCTACTCCCTTCATTCCCAATCCAAATCTACCGATGCCAAATCGGCATTGCTCGATTTCTTGAACGCCGACGTTTCTCTGGCTGACACGTGGAAGATTTTCTCTGCTTCTGATGAACGATTTGCGGAACTGGCGCAACATTTGAGTGGTGCTAGGGTTTTGAGACAAGATCCTTTTGAATGCTTGATTCAGTTTATGTGTTCTTCTAATAATCATATTAGTAGAATCACCAAAATGGTTGAATATGTTTCGTCTCTTGGGACTTATTTAGGTCATGTTGAAGGTTTTGATTTTCATGCTTTTCCTACTCTTCATCAGCTTTCGTTGGTCTCTGAACAACAACTCAGAAATGCTGGTTTTGGTTACAGGGCTAAGTATATAGTTGGCACTGTAAATGCTTTGCAATTGAAACCTGGAGGTGGGGAAGAATGGCTTCGTTCTCTTCGAAAATTGGAGCTTCAAGAGGTTATATCTGAGCTTTCAAAGTTACCTGGAGTGGGTCCTAAAGTGGCTGCTTGTATAGCTCTATACTCGCTTGATCAACACCATGCTATTCCTGTTGATGTTCATGTGTGGCGGATTGCTCAAAAGTATCTCTTACCCGAGCTTGCAGGTTCCAAGCTGACACTGAAGCTTTACAATCGTGTTGCTGAGGCTTTTGTAACAAAATATGGTAAATATGCCGGTTGGGCTCAAGCTGTTTTATTTATTGCTGAGTTGCCTTCACAGAAGGCCCTTCTACCTTCACATTTGAAAACTACCAAACATCAGACTCCCACGAAGAGAGAAAACCATGAAGAAGCTGTGACACCAATGGGTGGTGAGTCTGGAGATATGGATGCTGGAGACTCAGGCATGACACACTAA 1131 0.4518 MTKRKRSPKSLPPPPSTPPTPQTQTRHSTNISKSRVWIPLNITRQELSLPLTFPTGQTFRWKNTAPSQYTGVIGPHLVSLKHLQNGDVCYSLHSQSKSTDAKSALLDFLNADVSLADTWKIFSASDERFAELAQHLSGARVLRQDPFECLIQFMCSSNNHISRITKMVEYVSSLGTYLGHVEGFDFHAFPTLHQLSLVSEQQLRNAGFGYRAKYIVGTVNALQLKPGGGEEWLRSLRKLELQEVISELSKLPGVGPKVAACIALYSLDQHHAIPVDVHVWRIAQKYLLPELAGSKLTLKLYNRVAEAFVTKYGKYAGWAQAVLFIAELPSQKALLPSHLKTTKHQTPTKRENHEEAVTPMGGESGDMDAGDSGMTH 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03521 376 Gene3D - 119 328 IPR023170 -
Trre5g03521 376 SMART endo3end 155 327 IPR003265 GO:0006284
Trre5g03521 376 SUPERFAMILY TATA-box binding protein-like 28 144 - -
Trre5g03521 376 Pfam 8-oxoguanine DNA glycosylase, N-terminal domain 40 150 IPR012904 GO:0003684|GO:0006289|GO:0008534
Trre5g03521 376 MobiDBLite consensus disorder prediction 340 376 - -
Trre5g03521 376 FunFam N-glycosylase/DNA lyase 145 269 - -
Trre5g03521 376 FunFam N-glycosylase/DNA lyase OGG1 266 328 - -
Trre5g03521 376 Pfam HhH-GPD superfamily base excision DNA repair protein 151 287 IPR003265 GO:0006284
Trre5g03521 376 Gene3D - 23 109 - -
Trre5g03521 376 PANTHER 8-OXOGUANINE DNA GLYCOSYLASE 26 350 - -
Trre5g03521 376 Gene3D Hypothetical protein; domain 2 145 269 - -
Trre5g03521 376 MobiDBLite consensus disorder prediction 1 30 - -
Trre5g03521 376 CDD ENDO3c 147 325 IPR003265 GO:0006284
Trre5g03521 376 SUPERFAMILY DNA-glycosylase 145 326 IPR011257 GO:0003824|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03521 Trre-Chr5 32779790 32781760 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03521 K03660 - gmx:100789749 545.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03521 5 32779790 32781760 Trre5g03521 5 32779790 32781760 ECH