Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03516 ATGGGGACAACGAAGAACACCAAAACCAAAATAATCAAAAACAAACAAAACGATAAGAAAACCATCGCCGATGGAACCAACAAGGAAACCAAATCAGACAACAATGGTGTTTTTGCTTCTTGTTCCTTTTCTAGTCTTGGTCTTCACCAAACCTTATGTGACCAACTTCATGCATTGTCGGTTCCATTGTCCAATAGAAACCGCGATTCTGAATCATTTCATTCTCTTCACCTCAATTTCGTTTTTGAGAAATTGGCCAACGAACCTCACTCTCCTCTGTTGCTGCATATGGCCTCAAGTTCAGATTTTGCTTTAACAGTTCCTTCTGAGCTGGAATCAATTTTGAGGTTGAAAACTGTGAACTACTTTGTTACAAGGAGGCCTTGGCTTGATCTTTATGGAGTTAATGTGAGGCCTGTTGCGCCGTTTGGAAGTACAAGTAGAAAGCCTTATGTAGATTCTTCTCTTCTACATCGATGCTTACCGGATGAGCTTCTGTTTGAGGTCTTTGCTCGAATGACTCCATATGATATGGGAAAAGCATCTTGTGTTTGTCGAAAATGGCGGTATACAATTCGTAACCCTGTATTTTGGCGCAATGCATGCTTGAAGGGTTGGCAGCTCTCTGGAGCAGTTGAAAACTATAAGATACTTCAATCAAAATACGATGGCTCATGGCGGAAAATGTGGCTTTTACGTCCAAGGTTGCGAACTGATGGTCTTTATGCTAGTAGAAATACTTACATTCGGGTTGGAGTTGCAGAATGGAAAGTCACTAATCCAGTTCATGTGGTCTGTTATTTCCGGTATTTGAGATTTTTTCCTTCTGGGAGATTTCTTTACAAGAATTCTTCTCAAAAGATCAAGGATGTGGTGAAGTGCATGAACTTTCGGTTAAGGGGAACAACTACAGGGGCTAACAATAGGATGGATTTGATCTCACTTGTCACTAGTGGTGTGGACAATAATGAGGCAAGTGCATATGAGGAGGACATTCTTGGAGTTGTTGAAGGATGGCAGGATGATGAAACCCACAACCCAGATGTGCCTGCAGTCTCTCATAAGAGGGGAATGACTCCCTTTGTCTTTGTTCCATTTGAAGAGGTGGAAACATCTGTTCTGAATTTGCCCGTGGAGAAAATGGATTATTATGTTCCTGGTTGA 1164 0.4149 MGTTKNTKTKIIKNKQNDKKTIADGTNKETKSDNNGVFASCSFSSLGLHQTLCDQLHALSVPLSNRNRDSESFHSLHLNFVFEKLANEPHSPLLLHMASSSDFALTVPSELESILRLKTVNYFVTRRPWLDLYGVNVRPVAPFGSTSRKPYVDSSLLHRCLPDELLFEVFARMTPYDMGKASCVCRKWRYTIRNPVFWRNACLKGWQLSGAVENYKILQSKYDGSWRKMWLLRPRLRTDGLYASRNTYIRVGVAEWKVTNPVHVVCYFRYLRFFPSGRFLYKNSSQKIKDVVKCMNFRLRGTTTGANNRMDLISLVTSGVDNNEASAYEEDILGVVEGWQDDETHNPDVPAVSHKRGMTPFVFVPFEEVETSVLNLPVEKMDYYVPG 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03516 387 SUPERFAMILY F-box domain 158 237 IPR036047 GO:0005515
Trre5g03516 387 SMART fbox_2 161 201 IPR001810 GO:0005515
Trre5g03516 387 PANTHER F-BOX ONLY PROTEIN 48-RELATED 141 370 IPR045118 GO:0019005|GO:0031146
Trre5g03516 387 ProSiteProfiles F-box domain profile. 155 201 IPR001810 GO:0005515
Trre5g03516 387 Pfam F-box-like 159 204 IPR001810 GO:0005515
Trre5g03516 387 FunFam F-box protein 7 147 239 - -
Trre5g03516 387 Gene3D - 145 239 - -
Trre5g03516 387 CDD F-box_AtGID2-like 159 202 - -
Trre5g03516 387 Pfam F-box only protein C-terminal region 296 387 IPR045464 -
Trre5g03516 387 Pfam F-box only protein C-terminal region 215 298 IPR045464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03516 Trre-Chr5 32737110 32744661 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03516 K10295 - gmx:100786704 543.117