Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03487 ATGAAATTCCAAAACTCTCTGTTTCACTGTCCAATCAAATTTTTACTAACCGTTATAATTCTGGATCACTTCACGGTTTCAACCGCCGTGAAAATACCTTCCGCCGCTTACGACCGCGTTTTGTTCTCCGATCGGAGATGCAACGATCGGGATAACAAAGAGTTAACTATAACGCTATGCAAAAACGAGACGCTGAGAGGGAAAACTGCAACGAACTGCGAAGTTTGGAACGAAGCATGTTCGGAGGCGGTGTTGAACTTAGCACGGCGGCCGGAGACAGTTGAGTGGTTGAAAAGTGTTCGGAGGAAGATCCATGAGAATCCGGAGTTGGCTTTTGAGGAAATCGAGACGAGCCGTTTGATAAGAGAAGAGTTGGATCTGATGGAAGTTAGTTATCGGTATCCTCTCGCGAAAACCGGTATTCGTGCCTGGATCGGTACTGGTGGACCGCCTTTTGTTGCAGTTAGAGCTGACATGGATGCACTTCCCATACAGGAAAGCGTGGAATGGGAGTTCAAATCTAAAGTTGCTGGCAAAATGCACGCTTGTGGGCACGACGCACATGTGGCGATGCTTATTGGAGCTGCCAAGATCTTAAAAACTCGAGAGCATTTATTAAAGGGGACAGTAATTCTGTTATTTCAGCCTGCAGAGGAAGCTGGTAATGGAGCAAAACGAATGATACAGGATGGTGCTTTGCAAGATGTGGAAGCTATATTTGCAGTTCATATATCCCATCAACTTCCAACTGCTGTAATTGGGTCAAGGCCGGGACCCCTGTTGGCTGGCTGTGGATTTTTCAGAGCCGTAATTAGTGGGAAAAGCTCCCTTGCTGCGAAATCACACCAGTATGCTGATCCAGTTTTGGCTGCTTCAGCTGCAGTTATAAGCTTACAGGGCATTGTCTCCCGCGAATCAAATCCATTGGATTCACATGTTGTGTCTGTAACTTTATTTAATGGAGGCAACAGTCATGACATGACACCGGACACGGTGGTCATTGGTGGGACCTTCAGAGCATTTTCTAACAGTAGTTTTTACCAGCTGCTAAAAAGAATAGAGCAGGTGATTGTGGAACAGACTAGTGTCTACAGATGCTCTGCAGAAGTTGACTTCTTTGAAAAGGAGTACACTATTTACCCTCCGATGGTTAATGACGACCAAATGTATGAGCATGTGAAAAAAGTGTCCATCGATTTGCTGGGTCAAAAGAATTTCAGGGTAGTCTCACCTGTGATGGGTGCTGAAGATTTCTCTTTTTACTCTCAGGTGGTTCCTTCAGCTTTCTTCTACATAGGGATAAGAAATGAGACATTGGGCTCTATTCACACGGCACACTCTCCGCATTTCATGATTGATGAAGATGCTCTACCAATCGGAGCGGCTGTTCATGCCACTGTTGCAGAGAGGTACCTCATTGAACATGGTTAA 1431 0.4542 MKFQNSLFHCPIKFLLTVIILDHFTVSTAVKIPSAAYDRVLFSDRRCNDRDNKELTITLCKNETLRGKTATNCEVWNEACSEAVLNLARRPETVEWLKSVRRKIHENPELAFEEIETSRLIREELDLMEVSYRYPLAKTGIRAWIGTGGPPFVAVRADMDALPIQESVEWEFKSKVAGKMHACGHDAHVAMLIGAAKILKTREHLLKGTVILLFQPAEEAGNGAKRMIQDGALQDVEAIFAVHISHQLPTAVIGSRPGPLLAGCGFFRAVISGKSSLAAKSHQYADPVLAASAAVISLQGIVSRESNPLDSHVVSVTLFNGGNSHDMTPDTVVIGGTFRAFSNSSFYQLLKRIEQVIVEQTSVYRCSAEVDFFEKEYTIYPPMVNDDQMYEHVKKVSIDLLGQKNFRVVSPVMGAEDFSFYSQVVPSAFFYIGIRNETLGSIHTAHSPHFMIDEDALPIGAAVHATVAERYLIEHG 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03487 476 NCBIfam amidohydrolase 99 460 IPR017439 GO:0016787
Trre5g03487 476 Gene3D - 262 381 - -
Trre5g03487 476 Pfam Peptidase family M20/M25/M40 154 469 IPR002933 GO:0016787
Trre5g03487 476 Gene3D Zn peptidases 99 465 - -
Trre5g03487 476 SUPERFAMILY Bacterial exopeptidase dimerisation domain 263 372 IPR036264 -
Trre5g03487 476 SUPERFAMILY Zn-dependent exopeptidases 92 474 - -
Trre5g03487 476 FunFam N-acetyldiaminopimelate deacetylase 262 380 - -
Trre5g03487 476 PANTHER PEPTIDASE M20 FAMILY MEMBER 77 475 IPR017439 GO:0016787
Trre5g03487 476 CDD M20_IAA_Hyd 97 472 IPR044757 GO:0009850|GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03487 Trre-Chr5 32163979 32169871 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03487 K21604 - gmx:100800794 751.125