Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03486 ATGGCTTCTTCTTCAACAATCCCAAACGTATCCTTAACATTGAATTGTCAAACCTACGTTGATCTCAAATCACCGTTGCCGAGCTACTTCAGCTTCTCTTCATCCAAGCGTCGACGACCTCCATGTCTTTTTACGGTTAGAGCTAGCGACTCAGATTTCGAGGCCGCCGTTGTTGCCGGTAATGTGCCGGAAGCGCCTCCTGTACCGCCTATACCTGCTGCACCAGCGGGAACACCGGTGGTTCCTTCACTTCCAATTCAGAGGCGTCCTCGTCGTAATCGAAGGTCGCCTGTACTTCGATTGGCGTTTCAGGAAACGAGTTTATCACCTGCTAATTTTGTGTATCCACTTTTTATACATGAAGGTGAGGAGGACACCCCAATTGGGGCTATGCCTGGATGCTATAGGCTTGGCTGGAGACATGGACTTGTGGAAGAGGTTGCAAAAGCAAGGGATGTTGGTGTTAACAGTGTTGTGCTCTTCCCCAAAATTCCAGATGCTTTAAAGTCTCCCACAGGTGATGAAGCATACAATGAGAATGGTTTAGTTCCTCGGACTATACGGTTACTCAAGGATAAGTACCCAGATCTTATTATTTATACAGATGTTGCATTAGATCCTTATTCGTCTGAGGGACATGATGGCATAGTCAGAGAAGATGGAGTTATTATGAATGATGAGACTGTTCATCAGCTTTGTAAACAAGCTGTAGCCCAGGCCCGAGCTGGAGCAGATGTTGTCAGCCCCAGCGATATGATGGATGGCCGGGTAGGAGCAATGCGATTAGCTCTTGATGCTGAAGGTTTTCAGCATGTTTCTATAATGTCATATACAGCAAAGTATGCAAGTTCATTTTACGGCCCATTTAGAGAAGCATTGGACTCAAACCCCCGGTTCGGAGACAAGAAGACCTACCAGATGAATCCAGCAAATTACAGAGAGGCTTTGACTGAGATGAGGGAAGATGAATCTGAAGGAGCTGACATTCTCTTGGTGAAGCCCGGTCTTCCTTATTTGGATATCATTAGGCTGCTTAGAGATAATTCTCCTCTGCCAATTGCAGCATACCAGGTTTCTGGTGAATACTCAATGATAAAAGCTGGCGGTGCTCTGAAAATGATTGATGAAGAAAAGGTTATGATGGAGTCATTATTGTGCCTCCGACGGGCAGGTGCTGACATCATCCTTACATATTTTGCTTTACAAGCTGCCAGATGTTTGTGTGGAGAGAAGAGGTGA 1239 0.4576 MASSSTIPNVSLTLNCQTYVDLKSPLPSYFSFSSSKRRRPPCLFTVRASDSDFEAAVVAGNVPEAPPVPPIPAAPAGTPVVPSLPIQRRPRRNRRSPVLRLAFQETSLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVEEVAKARDVGVNSVVLFPKIPDALKSPTGDEAYNENGLVPRTIRLLKDKYPDLIIYTDVALDPYSSEGHDGIVREDGVIMNDETVHQLCKQAVAQARAGADVVSPSDMMDGRVGAMRLALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALTEMREDESEGADILLVKPGLPYLDIIRLLRDNSPLPIAAYQVSGEYSMIKAGGALKMIDEEKVMMESLLCLRRAGADIILTYFALQAARCLCGEKR 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03486 412 SMART ALAD_2 85 407 IPR001731 GO:0004655|GO:0033014|GO:0046872
Trre5g03486 412 Pfam Delta-aminolevulinic acid dehydratase 88 405 IPR001731 GO:0004655|GO:0033014|GO:0046872
Trre5g03486 412 PRINTS Delta-aminolevulinic acid dehydratase signature 326 342 IPR001731 GO:0004655|GO:0033014|GO:0046872
Trre5g03486 412 PRINTS Delta-aminolevulinic acid dehydratase signature 236 255 IPR001731 GO:0004655|GO:0033014|GO:0046872
Trre5g03486 412 PRINTS Delta-aminolevulinic acid dehydratase signature 381 400 IPR001731 GO:0004655|GO:0033014|GO:0046872
Trre5g03486 412 PRINTS Delta-aminolevulinic acid dehydratase signature 274 293 IPR001731 GO:0004655|GO:0033014|GO:0046872
Trre5g03486 412 PRINTS Delta-aminolevulinic acid dehydratase signature 205 219 IPR001731 GO:0004655|GO:0033014|GO:0046872
Trre5g03486 412 PRINTS Delta-aminolevulinic acid dehydratase signature 351 366 IPR001731 GO:0004655|GO:0033014|GO:0046872
Trre5g03486 412 SUPERFAMILY Aldolase 83 408 - -
Trre5g03486 412 CDD ALAD_PBGS_aspartate_rich 96 408 - -
Trre5g03486 412 Gene3D Aldolase class I 78 412 IPR013785 -
Trre5g03486 412 ProSitePatterns Delta-aminolevulinic acid dehydratase active site. 326 338 IPR030656 -
Trre5g03486 412 FunFam Delta-aminolevulinic acid dehydratase 77 412 - -
Trre5g03486 412 PANTHER DELTA-AMINOLEVULINIC ACID DEHYDRATASE 67 409 IPR001731 GO:0004655|GO:0033014|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03486 Trre-Chr5 32158928 32163173 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03486 K01698 - gmx:548095 671.003