Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03477 ATGGCTAAAAGCGTTGCGATTTTCGCTTTATTGTTTTCTCTTCTTGTTTTCGTTCCTTCTCAGATCTCCGCTGAGGAATCTGAGGCTAAGGAATTTGTTCTTACATTGGATAACACTAACTTTCATGACACTGTTACCAAGCATGATTTCATCGTTGTTGAGTTCTACGCACCATGGTGTGGACACTGTAAGAAGCTTGCACCAGAGTATGAGAAAGCTGCGTCTATCTTGAGCAGTCATGAAACCCCAATTGTTTTGGCTAAAGTTGATGCCAATGAGGAGAAGAACCGGGACCTCGCATCCGAATATGACGTTAAGGGATTCCCAACAATTAAGATTTTGAGAAATGGTGGAAAGAACATTCAAGAATACAAGGGTCCACGTGAAGCTGATGGCATCGTTGAATATTTAAAGAAACAAAGTGGACCTGCATCAACAGAAATTAAATCTGCAGATGATGCTACTGCACTTATTGGTGAAAACAAAGTTGTTATTGTTGGAGTTTTCCCTAAATTCTCTGGGGAGGAGTTTGATAACTTCACTGCATTAGCAGAGAAGTTGCGCTCTGACTATGACTTCGGTCACACTTTGGATGCCAAACACCTTCCAAAGGGAGAATCATCAGTCTCCGGTCCCGTAGTTAGGTTATTCAAGCCATTTGACGAGCTCTTTGTTGACTCCAAGGAATTCAATGTTGAAGCTCTAGAGAAATTCATTGAAGAATCCAGTATCCCCGTTGTGACTATCTTTAACAATGAACCAAACAACCACCCTTTTGTTGTCAAATTCTTTAACACTCCCAACGCAAAGGCAATGTTGTTCATCAACTTTACTGCCGAAGGTGCTGAATCTTTCAAATCAAAATACCATGAAACTGCTGAGCAATACAAACAACAGGGAATTAGCTTTCTGATTGGAGATGTTGAGGCCAGTCAAGGTGCATTCCAGTATTTTGGACTAAAGGAAGACCAAGTACCTCTAATTATTATTCAGCATAATGATGGCAAGAAATTTTTCAAGCCCAATTTGGAACCAGATCACGTTGCAACTTGGTTGAAGGCATACAAGGATGGAAAAGTTGCACCATATGTCAAGTCTGAACCTATTCCTGAAACTAACAACGAACCTGTTAAAGTGGTTGTTGGGGAAACTCTTCAGGATATAGTTTTCAACTCAGGGAAAAATGTTTTGCTTGAGTTTTATGCTCCTTGGTGTGGTCACTGCAAACAGTTGGCTCCAATCTTGGATGAAGTTGCTGTCTCATTCCAAAAGGATGCTGATGTTGTTATTGCAAAATTGGATGCAACTGCCAACGATATCCCAAGTGAAACCTTTGAGGTCCAAGGTTATCCAACTTTGTACTTCAGGTCAGCAAGTGGAAAAATTTCACAATACGACGGCGGTAGGACAAAGGAAGACATCATTGAATTCATTGAAAAGAACAAGGATAAACCCGCCGCTGCTCAACAAGAAGCAGAACAACCAAAGGCCGCTGCTCAGGAAGAAAAAGAACAACCTAAAGACGAGCTTTGA 1533 0.411 MAKSVAIFALLFSLLVFVPSQISAEESEAKEFVLTLDNTNFHDTVTKHDFIVVEFYAPWCGHCKKLAPEYEKAASILSSHETPIVLAKVDANEEKNRDLASEYDVKGFPTIKILRNGGKNIQEYKGPREADGIVEYLKKQSGPASTEIKSADDATALIGENKVVIVGVFPKFSGEEFDNFTALAEKLRSDYDFGHTLDAKHLPKGESSVSGPVVRLFKPFDELFVDSKEFNVEALEKFIEESSIPVVTIFNNEPNNHPFVVKFFNTPNAKAMLFINFTAEGAESFKSKYHETAEQYKQQGISFLIGDVEASQGAFQYFGLKEDQVPLIIIQHNDGKKFFKPNLEPDHVATWLKAYKDGKVAPYVKSEPIPETNNEPVKVVVGETLQDIVFNSGKNVLLEFYAPWCGHCKQLAPILDEVAVSFQKDADVVIAKLDATANDIPSETFEVQGYPTLYFRSASGKISQYDGGRTKEDIIEFIEKNKDKPAAAQQEAEQPKAAAQEEKEQPKDEL 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03477 510 Pfam Thioredoxin-like domain 169 353 - -
Trre5g03477 510 SUPERFAMILY Thioredoxin-like 344 483 IPR036249 -
Trre5g03477 510 MobiDBLite consensus disorder prediction 496 510 - -
Trre5g03477 510 PANTHER PROTEIN DISULFIDE ISOMERASE 9 509 - -
Trre5g03477 510 Gene3D Glutaredoxin 246 370 - -
Trre5g03477 510 FunFam Protein disulfide-isomerase 372 485 - -
Trre5g03477 510 CDD PDI_a_family 34 137 - -
Trre5g03477 510 NCBIfam protein disulfide-isomerase domain 37 140 IPR005788 GO:0003756
Trre5g03477 510 NCBIfam protein disulfide-isomerase domain 381 481 IPR005788 GO:0003756
Trre5g03477 510 Pfam Thioredoxin 377 480 IPR013766 -
Trre5g03477 510 Pfam Thioredoxin 33 139 IPR013766 -
Trre5g03477 510 ProSiteProfiles Thioredoxin domain profile. 23 142 IPR013766 -
Trre5g03477 510 Gene3D Glutaredoxin 141 245 - -
Trre5g03477 510 ProSitePatterns Thioredoxin family active site. 397 415 IPR017937 -
Trre5g03477 510 PRINTS Thioredoxin family signature 104 115 - -
Trre5g03477 510 PRINTS Thioredoxin family signature 51 59 - -
Trre5g03477 510 PRINTS Thioredoxin family signature 59 68 - -
Trre5g03477 510 FunFam Protein disulfide-isomerase 242 371 - -
Trre5g03477 510 SUPERFAMILY Thioredoxin-like 33 143 IPR036249 -
Trre5g03477 510 CDD PDI_a_PDI_a'_C 376 478 - -
Trre5g03477 510 ProSitePatterns Thioredoxin family active site. 52 70 IPR017937 -
Trre5g03477 510 Gene3D Glutaredoxin 20 140 - -
Trre5g03477 510 CDD PDI_b_family 145 241 - -
Trre5g03477 510 CDD PDI_b'_family 260 356 - -
Trre5g03477 510 ProSiteProfiles Thioredoxin domain profile. 355 483 IPR013766 -
Trre5g03477 510 NCBIfam protein disulfide-isomerase 33 510 IPR005792 GO:0003756
Trre5g03477 510 MobiDBLite consensus disorder prediction 482 510 - -
Trre5g03477 510 FunFam Protein disulfide-isomerase 141 241 - -
Trre5g03477 510 SUPERFAMILY Thioredoxin-like 243 374 IPR036249 -
Trre5g03477 510 FunFam Protein disulfide-isomerase 22 140 - -
Trre5g03477 510 Gene3D Glutaredoxin 371 486 - -
Trre5g03477 510 SUPERFAMILY Thioredoxin-like 146 245 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03477 Trre-Chr5 31962208 31966002 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03477 K09580 - gmx:100170705 865.529