Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03451 ATGGCACAAACTATGTTGCTTATGTCTAGTGTCTCTAGTACTTATTCAGTGGAATTGAAGAAAGATCCTTTGCTTCAATTACAGTGCCAAAGATTGAGGTCTAGAATCTCTGATGTTTCATTCAACCCACTTTCTTCAAATTCTAAGTCTCTTTCATCTCGTACATTCACAACTCTTGCTCTATTCAAATCTAAAACCAAAGCCCCTGCTAAGGTTGTAAAGCCAAAACCAAAGGTTGAAGATGGTATCTTTGGAACTTCGGGAGGATTTGGTTTCACTAAGCAGAATGAACTATTTGTTGGTCGTGTTGCTATGATCGGTTTTGCAGCATCAATTTTGGGTGAAGCATTAACTGGCAAAGGAATTCTAGCACAATTGAATTTGGAAACTGGAATTCCAATTTATGAAGCAGAGCCTCTTCTCCTATTTTTCATTATCTTCACCCTTCTAGGAGCCATTGGAGCTCTTGGTGACCGTGGTAAATTTGTTGATGATGAACCAACTACTGGTGGTGTTATTCCTCCAGGAAAAGGCTTTAGAGCAGCTCTTGGTCTCAGTGAAGGAGGTCCTTTATTTGGATTCACCAAATCCAATGAACTGTTTGTTGGAAGATTGGCTCAATTGGGTTTTGTTTTCTCATTGATTGGAGAAATTGTTACTGGTAAGGGAGCTCTAGCTCAGCTCAACATTGAGACTGGGGTACCAATTACTGAAATTGAACCATTAGTCTTGTTCAATGTTATTTTCTTCTTCGTTGCTGCTTTGAATCCTGGAACTGGAACATTTGTAACAGATGATGAGGAAGATTAG 810 0.3926 MAQTMLLMSSVSSTYSVELKKDPLLQLQCQRLRSRISDVSFNPLSSNSKSLSSRTFTTLALFKSKTKAPAKVVKPKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASILGEALTGKGILAQLNLETGIPIYEAEPLLLFFIIFTLLGAIGALGDRGKFVDDEPTTGGVIPPGKGFRAALGLSEGGPLFGFTKSNELFVGRLAQLGFVFSLIGEIVTGKGALAQLNIETGVPITEIEPLVLFNVIFFFVAALNPGTGTFVTDDEED 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03451 269 FunFam Photosystem II 22 kDa protein, chloroplastic 137 239 - -
Trre5g03451 269 Pfam Chlorophyll A-B binding protein 70 211 IPR022796 -
Trre5g03451 269 Gene3D Chlorophyll a/b binding protein domain 55 134 - -
Trre5g03451 269 Gene3D Chlorophyll a/b binding protein domain 135 239 - -
Trre5g03451 269 PANTHER UPF0041 BRAIN PROTEIN 44-RELATED 76 130 - -
Trre5g03451 269 FunFam Photosystem II 22 kDa protein, chloroplastic 52 136 - -
Trre5g03451 269 SUPERFAMILY Chlorophyll a-b binding protein 62 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03451 Trre-Chr5 31328326 31331120 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03451 K03542 - gmx:100807355 405.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03451 5 31328326 31331120 Trre5g03451 5 31328326 31331120 ECH