Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03427 ATGTCATCGAATTCAAAATACCCGATTTTGGACGATAAGCCCATTAACCAGTGGAAGGTTACAGCTCTGAAAGAGGAATTGAAGAGAAGGAAGTTAGCTACCAAAGGTTTGAAGGAAGATTTAATTAACCGTTTGAACGAAGCCCTTCACGCGGAAAGGGAGACTACTGAGGCTTCCCCTGAACAAGAGGCTGCTGTGGGTTCGGAGAAGGATGGGGCTAATGGTTTAAATGCTCAAGTAGATGGGGTGAAAGATTCCCAGACTGATAATGTGGACGCTGAAGTGGTTGATACAATTGAAAAGGAAAATTTCCAAACATTTGCTGCACAGGGGAATAGTGATGTAGTGAAGGTTTCAGAGGTTGTGGATAATGACAGTATTAAGAATGTTGAGCAGGATGGTGTCGCCGACCCAGTTGACGTTAATAATAGCGTGTCTGGCATGGATGTAGAAGGTGAACATGCAGTTTTGCCCGTTGGTCTAGAATCTGCCAATGTGGGAGAGGAGGTAGTTGCCCATCCTTCTACTGTGGAGACCACTGTTACGGTCACTGAGACTGTGGTCACCGAGACTGTATCAACAGAGGTAGTAGTCGGTGGTCAGGATTCTTATAGTTCAGAGAAGAATAATGAGGATTCAGCAAACAAGCTAGAGAATGAGGAATCAAGGGCGCAGCTGGATATTGAGGACTCAAAGCCCCAAGTGGAGTCTGACACAAAGCCCCCATCTGACGATCGCATGACCGACTCTTCTGCACCAGAAAACCAGGTATCTGAGGTCAACCCTAGTTTAGGGTCTCAAGTAAAATCTGATTCTTTTTCTACTGATTCTGTGTCAATTAATCAAAAGAATGAACTAAAGGATACTATAATTGCTAATAATAATGTCAAATTAGAACAAGATAATGTTAGGCCGGAGATGGTGGAAGAACCATCATCCAGAAATGTACCTGTTTATGATGAATCGCATTCAATGGATATTGGAGGGCTGCAAAAGCCATCTGTTGAAGAAAATAACAACATTGTTACAAGTCCAGACTTGAACAAAACCAATAGTAGTGATGATGTAGGGTATCCAGAAAAGTTGAACTTGGACAGAAGTTCTGGTGATGATTCCATGGAAGAGGACTTGCCTGAGACTAGGCAATATGATTCTAAGTTTAATGTTGATGAACTTGTAGACAAAGTTGAGAATAATGAAGTACCTATAGTCAAGGAGGAAAGGAATACAACAGATGTGGGAGATGGTGTATCTGCAAGAAAAAGCGATACCCACCAAGATATTGACATTAGTCCTGTTTCCCTGACTGAGAAGCGAAAATATCCTGAACAAACATTAGTTACGAACATTGAGCCTTCAAAAAGGCAGCGAAGGTGGAACACTGAAACAGTTAAAGGATCAGATCTGCAAAGCACTACTCCCAGATCTGCTACTACACCAACGGATGGGCAAATTACTCTGAAGCGCAACTTCTCTAGGTCTAATTCCTCTGCAACTGATGACACCCCTAAAGAACGCATTGTTCCACCATCTCGAAGGACCCCAACTAATTCTCTCAGGATTGATCAATTCCTCCGTCCATTTACCCTAAAGGCAGTGCAAGAACTTCTTGGCAAAACTGGGAGTGTTAGCAGTTTCTGGATGGACCAAATAAAAACCCATTGCTATGTTACTTACTCGTCCGTCGAAGAGGCCACTGAGACACGAAATGCTGTGTATAATTTGCAATGGCCTCCAAATGGTGGGCGGCTCTTAGTTGCTGAGTATGTTGATCCTGAAGAAGTGAAACTGAAGTTAGAAGCTCCTCCTACTCCAACTGCCCCTGTCATCAGTGTTCCAACAGTTCCTCCCGCACCACCGTCTTCACAGCCAGAGCCTTCCCCACGTCAGCAGAGGGAGCAGCACCTTCCAGTTACTCTCCCACCTCCACCTCCATTGTCAAGGCCCCCACCAGTTGCAAGGGAACGTCTTCCATCTCCCCCACCGCTTCCTGAGAAAGCAGACCCGCCTATTGTCACTCTGGATGATCTCTTCCGCAAAACCAAAGCAACTCCTCGGATCTATTATTTACCTTTGTCTGAAGAGCAAGTTGCTGCAAAACTTGCCGCACAGGGTAAAAATACGAGGCAGTAA 2133 0.4459 MSSNSKYPILDDKPINQWKVTALKEELKRRKLATKGLKEDLINRLNEALHAERETTEASPEQEAAVGSEKDGANGLNAQVDGVKDSQTDNVDAEVVDTIEKENFQTFAAQGNSDVVKVSEVVDNDSIKNVEQDGVADPVDVNNSVSGMDVEGEHAVLPVGLESANVGEEVVAHPSTVETTVTVTETVVTETVSTEVVVGGQDSYSSEKNNEDSANKLENEESRAQLDIEDSKPQVESDTKPPSDDRMTDSSAPENQVSEVNPSLGSQVKSDSFSTDSVSINQKNELKDTIIANNNVKLEQDNVRPEMVEEPSSRNVPVYDESHSMDIGGLQKPSVEENNNIVTSPDLNKTNSSDDVGYPEKLNLDRSSGDDSMEEDLPETRQYDSKFNVDELVDKVENNEVPIVKEERNTTDVGDGVSARKSDTHQDIDISPVSLTEKRKYPEQTLVTNIEPSKRQRRWNTETVKGSDLQSTTPRSATTPTDGQITLKRNFSRSNSSATDDTPKERIVPPSRRTPTNSLRIDQFLRPFTLKAVQELLGKTGSVSSFWMDQIKTHCYVTYSSVEEATETRNAVYNLQWPPNGGRLLVAEYVDPEEVKLKLEAPPTPTAPVISVPTVPPAPPSSQPEPSPRQQREQHLPVTLPPPPPLSRPPPVARERLPSPPPLPEKADPPIVTLDDLFRKTKATPRIYYLPLSEEQVAAKLAAQGKNTRQ 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03427 710 Gene3D SAP domain 15 61 IPR036361 -
Trre5g03427 710 MobiDBLite consensus disorder prediction 248 280 - -
Trre5g03427 710 SUPERFAMILY SAP domain 15 52 IPR036361 -
Trre5g03427 710 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 1 710 - -
Trre5g03427 710 ProSiteProfiles SAP motif profile. 15 49 IPR003034 -
Trre5g03427 710 MobiDBLite consensus disorder prediction 209 247 - -
Trre5g03427 710 MobiDBLite consensus disorder prediction 398 436 - -
Trre5g03427 710 MobiDBLite consensus disorder prediction 606 626 - -
Trre5g03427 710 CDD RRM_ACINU 516 600 IPR034257 -
Trre5g03427 710 SUPERFAMILY RNA-binding domain, RBD 510 597 IPR035979 GO:0003676
Trre5g03427 710 MobiDBLite consensus disorder prediction 359 382 - -
Trre5g03427 710 MobiDBLite consensus disorder prediction 333 357 - -
Trre5g03427 710 MobiDBLite consensus disorder prediction 599 672 - -
Trre5g03427 710 Pfam RNSP1-SAP18 binding (RSB) motif 664 707 IPR032552 -
Trre5g03427 710 SMART sap_9 15 49 IPR003034 -
Trre5g03427 710 Pfam SAP domain 15 49 IPR003034 -
Trre5g03427 710 MobiDBLite consensus disorder prediction 398 516 - -
Trre5g03427 710 MobiDBLite consensus disorder prediction 297 382 - -
Trre5g03427 710 MobiDBLite consensus disorder prediction 637 668 - -
Trre5g03427 710 MobiDBLite consensus disorder prediction 463 502 - -
Trre5g03427 710 MobiDBLite consensus disorder prediction 198 280 - -
Trre5g03427 710 MobiDBLite consensus disorder prediction 48 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03427 Trre-Chr5 31013349 31016124 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03427 K12875 - gmx:100786288 918.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03427 5 31013349 31016124 Trre5g03427 5 31013349 31016124 ECH