Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03421 ATGTCGTTACGGTGGCGCTTCTTGCTTCTTTTCTTACTTTCGGTCATAGTTAGTTACGCAATGCCGGTTCCGACAACTTTTTCTGTAAAGCTGGTTCACCGGTTCTCCGAAGAAATGAAACCGGTTCGGGTTAAGACCGGTGACTGGCCGGACCGGCGGAGTATGCGATACTATCAGATGCTTCTCGGAAATGACTTTCTTAGACACAAGATCAACCTCGGTGCCGCTCGCCACCAGTTTTTGTTCCCTTCTCAAGGTAGCAAAACGATGTCGTTTGGAAACGACTTTGGATGGTTACATTACACATGGATTGATATAGGTACACCGAGTACTTCGTTTCTTGTAGCGTTGGATGCAGGGAGTGATCTTCTTTGGGTTCCTTGTGATTGCATACAGTGTGCTCCCTTGTCTGCGAGTTTCTACTCCAATTTGGATAGAGATTTGAATGAGTATAGTCCCTCTCGTTCGTTATCCAGCAAGCATTTATCTTGCAGCCATCGGTTATGTGATACGGGTTCAAATTGTAAAACTAACAAGCAGCAGTGTCCGTACACGGCCAATTACTTATCAGAGAATACATCAAGTTCTGGGTTGTTAGTTGAGGACATATTGCATCTTCAATCCAGCGACGGAAGTGGCAGCAAATCTAACTCTTCTGTTCAGGCTCCAGTTGTTGTCGGGTGTGGTATGAAGCAAAGTGGTGGTTATTTGGATGGCGTTGCTCCGGACGGTGTCATTGGTTTGGGACCCGGGGAGAGTTCAGTTCCGAGTTTTCTTGCTAAATCAGGATTAATCCGTGATTCTTTTTCGTTGTGCTTTAATGAAGATGATTCTGGTAGATTATTTTTTGGTGATCAGGGGCCAACCGTGCAACAGTTTACCCCATTCCTGCCCTTGGATGGAATGTTTTCAACCTATATTATTGGAGTGGAAGCATGTTGTATCGGGAGTTCATGTCCTAAAGTAACAAGTTTTAATGCTCTGTTTGATAGCGGAACATCATTTACGTTTCTTCCTGGTCATGCATATGGAGCAATAGCCGAGGAGTTTGACAAACAAGTAAATGCTACAAGATCTACCTTTCAAGGATCTCCTTGGGAGTATTGTTATGTACCCAGTTCGCAACAGCTGCCTAAGATTCCTACATTGACACTCATGTTCCAACAGAATAACAGTTTTGTGGTCTATAATCCTGTGTTTGTATCTTACAACAATCAGGGAGTTGATGGATTTTGTTTGGCAATACAGCCAACCGATGGGGATCTTGGAACAATTGGACAAAATTTCATGACAGGATACCGGTTGGTATTTGATAGGGAAAACAAGAAGCTAGCATGGTCACGCTCAAATTGTCAGGATCTCAGTCTAGGTAAGAGGATGCCCATCTCCCCTCTGAACGGGTCATCGCCAAATCGACTGCCTGCAGATGAGCAGCAAAGAACCAAAGGGCATGCAGTTGCTCCAGCTGTTGCTGGAAGGGCTCCTCAAACACCTTCAGTTGTTTCATCTCAGATATCACAGATGGTTTCTTACCGGCAACATTGGCACTGCTATTGGTTGCTTCTATTTCAACTTCTGTCGGTCTTTTACTAA 1593 0.4444 MSLRWRFLLLFLLSVIVSYAMPVPTTFSVKLVHRFSEEMKPVRVKTGDWPDRRSMRYYQMLLGNDFLRHKINLGAARHQFLFPSQGSKTMSFGNDFGWLHYTWIDIGTPSTSFLVALDAGSDLLWVPCDCIQCAPLSASFYSNLDRDLNEYSPSRSLSSKHLSCSHRLCDTGSNCKTNKQQCPYTANYLSENTSSSGLLVEDILHLQSSDGSGSKSNSSVQAPVVVGCGMKQSGGYLDGVAPDGVIGLGPGESSVPSFLAKSGLIRDSFSLCFNEDDSGRLFFGDQGPTVQQFTPFLPLDGMFSTYIIGVEACCIGSSCPKVTSFNALFDSGTSFTFLPGHAYGAIAEEFDKQVNATRSTFQGSPWEYCYVPSSQQLPKIPTLTLMFQQNNSFVVYNPVFVSYNNQGVDGFCLAIQPTDGDLGTIGQNFMTGYRLVFDRENKKLAWSRSNCQDLSLGKRMPISPLNGSSPNRLPADEQQRTKGHAVAPAVAGRAPQTPSVVSSQISQMVSYRQHWHCYWLLLFQLLSVFY 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03421 530 Pfam Xylanase inhibitor N-terminal 101 285 IPR032861 -
Trre5g03421 530 MobiDBLite consensus disorder prediction 457 492 - -
Trre5g03421 530 Gene3D Acid Proteases 286 453 IPR021109 -
Trre5g03421 530 ProSiteProfiles Peptidase family A1 domain profile. 100 447 IPR033121 -
Trre5g03421 530 PANTHER ASPARTYL PROTEASES 9 444 IPR001461 GO:0004190|GO:0006508
Trre5g03421 530 FunFam Aspartyl protease family protein 1 288 453 - -
Trre5g03421 530 PRINTS Pepsin (A1) aspartic protease family signature 327 338 IPR001461 GO:0004190|GO:0006508
Trre5g03421 530 PRINTS Pepsin (A1) aspartic protease family signature 423 438 IPR001461 GO:0004190|GO:0006508
Trre5g03421 530 PRINTS Pepsin (A1) aspartic protease family signature 106 126 IPR001461 GO:0004190|GO:0006508
Trre5g03421 530 Pfam Xylanase inhibitor C-terminal 326 447 IPR032799 -
Trre5g03421 530 MobiDBLite consensus disorder prediction 457 476 - -
Trre5g03421 530 FunFam Aspartyl protease family protein 1 86 285 - -
Trre5g03421 530 SUPERFAMILY Acid proteases 95 452 IPR021109 -
Trre5g03421 530 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 327 338 IPR001969 GO:0004190|GO:0006508
Trre5g03421 530 Gene3D Acid Proteases 74 285 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03421 Trre-Chr5 30915000 30918825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03421 93 454 Miscellaneous Gene Families AT1G44130 27.132 1.34e-23 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03421 - - tpra:123903964 978.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03421 5 30915000 30918825 Trre5g03421 5 30915000 30918825 ECH