Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03410 ATGGAATCGGAATCGCCAAGATCCGAAACTCAAACGGATCCTCTTCAAAACCCCTTAGACGAACTCTGTCACGATCTTCACTCTCTTCAAGATCTAGCTAACCGTGGCGCGTGGCGTTCTATCATCGACAAAGTCGCACGCGCCAGAGCACTCTCTCTTCTCCAAAAACCTCACGATCATCTCACATACCTCGCATTCAACGCACTCGCATTCACAAAACTACGTCGTTTCAATGAAGCTTCTTCTGAACTTGATTCCGTTGAAGATCTCGATAGTTCTCACTACAAGTACGAAACCTACCCTAAAATTTACCCTAATCGGGTCGGATCCATGGTTCCTTTCTCTCTCCGATGGCTTCATGCTCTAATTCCGATCAAATTAGGTCAACGCCAACAAGGAATTGATCGATTATATCGTCTTCTGGATTTCGTGCGGGAGAAGATTAAGGATAAAGAAAGCAATAATTTCAGTGTTTCCACTCGTATGTGGAAAAAAAGAGAGGTTTTTGTTGTGAATTGTATAATTGGTCACCATTTGAGTCACAAAGAGTTTGGTGTTTGTTTAAGCTTGATAAAAACCCTAATTTCTAACGATTCTTCGGATCCTTTTTTGATTTCGCAACTTGGGTATATTCAACTGCAAACTGGTGATTTAGAAGGTGCGAAAGCTTCGTTTTTGAAAGCTGAAGTTGATGGGAAGAATAATGGGTCGTTGAGTGAGGTTGAGTTTAAGAACCTTGTGAATAGAAACAAGGCTTTGGTGTATATGGTTGGGAAGGATTATGTATCTGCGGTTAGAGAGTATGAAGAATGCATTGAGAGAGATCATAGTGATATAGTAGCTTTTAATAATAAAGCTCTTTGTTTGATGTATTTGAGGGATTTGTCTGATTCAATCAAGGTGTTGGAAAATGCTCTTGAAAGGGTTCCTACTGTTGCTCTCAATGAAACCCTTGTTGTGAATTTGTGTAGTATGTATGAGTTGGCTTATGTTAATCATTCTGATATTAAGAGAACACTTAGTAGTTGGATTGCTCGTGTTGCTCCTGATGATTTCGATGCAACTTGTACTCGTACATGA 1080 0.4009 MESESPRSETQTDPLQNPLDELCHDLHSLQDLANRGAWRSIIDKVARARALSLLQKPHDHLTYLAFNALAFTKLRRFNEASSELDSVEDLDSSHYKYETYPKIYPNRVGSMVPFSLRWLHALIPIKLGQRQQGIDRLYRLLDFVREKIKDKESNNFSVSTRMWKKREVFVVNCIIGHHLSHKEFGVCLSLIKTLISNDSSDPFLISQLGYIQLQTGDLEGAKASFLKAEVDGKNNGSLSEVEFKNLVNRNKALVYMVGKDYVSAVREYEECIERDHSDIVAFNNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIARVAPDDFDATCTRT 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03410 359 Pfam Tetratricopeptide repeat 207 228 IPR019734 GO:0005515
Trre5g03410 359 SMART tpr_5 202 234 IPR019734 GO:0005515
Trre5g03410 359 SMART tpr_5 245 278 IPR019734 GO:0005515
Trre5g03410 359 SMART tpr_5 279 312 IPR019734 GO:0005515
Trre5g03410 359 Gene3D Tetratricopeptide repeat domain 171 340 IPR011990 GO:0005515
Trre5g03410 359 SUPERFAMILY TPR-like 191 314 IPR011990 GO:0005515
Trre5g03410 359 FunFam Trafficking protein particle complex subunit 12 170 341 - -
Trre5g03410 359 Coils Coil 134 154 - -
Trre5g03410 359 PANTHER D-ALANYL-D-ALANINE CARBOXYPEPTIDASE 10 357 - -
Trre5g03410 359 SUPERFAMILY TPR-like 57 228 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03410 Trre-Chr5 30834683 30835762 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03410 K20309 - gmx:100779691 601.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03410 5 30834683 30835762 Trre5g03410 5 30834683 30835762 ECH