Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03383 ATGGGAGACATTTCGCCAGAGAGAAAATCGGGTTGTGGATTGATGACAACAGTATTCGGAAGACATAGTCAAAGGTCGAAAAAAGCATCCTCTACAGGTTCTTCTCCCATACCAAACAACGGTACTAATGATCCAAAACGACGTAGAAGTGCCTCTAAAGAGGTTGTTTACGGAGATCCACCTTCACACAACGTCTCAAACACTTCAACTACTCGTTCTGGTTCCAAGTCTTCTTGTTCATCAAATAATAATAATAATAATAATAATCCACAAAGACAAAACTCCAACGAAACGACAATGCCACGTGGCACGTCAAAGAATTCAAATTCATCAACTACACAGGGGTATGTTAATCAAGGTAGGAGGGTGCCAAAAGAAGTTGTTGGAATTTCAGGTGAGTTAGATAGCATGATCAATGATCACCAAAAATCTAACTCCAAAGGGAGTACTTTTGTTCGCGCTTCTTCCGGCAATGTTATGTTGTATGGAAATTTAGGTAATCTTAGACAAGGAGCTAAAGATAATAGTTATTCAAATGCAATGGATAATTATAACCAATACTTTGAAACTGCAAATGCAAATTCAAATGTTGGAGGAAACACAAAGAATGTGTCAAGTATTAATAAAGAAACAAAATCCTCGACGAAATTCAAACAAGAAAATAAAGGTGGTGGTTCACTTTGTAGAGCTATATCAACTAGAATGGATCCAGAGCAGTTGAAGATAATGGGGAACGAGGATTATAAGAATGGACGATTTGCGGAGGCATTATCTTTGTATGACGCAGCTATTGCAATTGATCCTAAAAAAGCTGCTTATAGAAGTAATAGAAGCGCTGCTTTAACTGCTCTCGGTAGGCTTCTTGAAGCCGTGTTTGAATGTAGGGAAGCCATTCAAATCGATCCTCATTATCATAGAGCTCATCATCGTTTAGGAAGTTTGCATTTTAGATTAGGAGAAACAGATAAGGCCCTTTATCATTATAAACAAGCAGGGCCAGAGGCTGATCCTGATGAGGTTGCTAAAGTGAAGATTCTTCAAGCTCATTTAAATAAGTGCACCGAGGCTCAAAGGGTAGGAGATTGGAACACACTCATTGTCGAGACCTCCAACACTATATCATCTGGTGCAGATTCTGCTCCACAGATATTTGCATTTCAAGCCGAAGCCCTGATAAAACTGCGAAGGCATCAAGATGCGGACAACGTAATGTCAAAATGTCCTAATTTTGATGTTGATGATTGTACCAAGTTCTTTGGACCAATTGGTAATGCAAATTTGTTAGCAACACGAGCTCAAGTTGATTTAGCTGCTGGCAGATTTGATGATGCTTTGGAGGCAGCACAAAAAGCAACTAGGCTAGACACTAACAACAAGTTAGCAAGCAAGGTATTGAGAAAGGCTCGTGCCGTGACAGGTGCAAGATGTAGAGGAAACGAGCTTTTCAAGGCGTCGAAATTCTCTGAGGCTTGTATAGCATATGGAGAAGGACTTGAGCATGATCCATATAACTCGGTTTTACTATGCAACCGGGCAGCTTGTCGATCAAAACTCGGTCAATTGGAGAAAGCAGTTGAAGATTGCACTGCTGCTCTTAACTTACGCCCATCTTACACCAAAGCTAGGTTGAGAAGAGCTGATTGTAATGCTAAGTTGGAAAGATGGGAAGCTTCAATTGGAGACTATGAAATCTTGTTAAAAGAGACACCAGAAGACGAGGAAGTGAACCGCGCATTGTCGGAGGCTCGGGTCCAACTTAAGAAACAACGACGCGGATAA 1779 0.4064 MGDISPERKSGCGLMTTVFGRHSQRSKKASSTGSSPIPNNGTNDPKRRRSASKEVVYGDPPSHNVSNTSTTRSGSKSSCSSNNNNNNNNPQRQNSNETTMPRGTSKNSNSSTTQGYVNQGRRVPKEVVGISGELDSMINDHQKSNSKGSTFVRASSGNVMLYGNLGNLRQGAKDNSYSNAMDNYNQYFETANANSNVGGNTKNVSSINKETKSSTKFKQENKGGGSLCRAISTRMDPEQLKIMGNEDYKNGRFAEALSLYDAAIAIDPKKAAYRSNRSAALTALGRLLEAVFECREAIQIDPHYHRAHHRLGSLHFRLGETDKALYHYKQAGPEADPDEVAKVKILQAHLNKCTEAQRVGDWNTLIVETSNTISSGADSAPQIFAFQAEALIKLRRHQDADNVMSKCPNFDVDDCTKFFGPIGNANLLATRAQVDLAAGRFDDALEAAQKATRLDTNNKLASKVLRKARAVTGARCRGNELFKASKFSEACIAYGEGLEHDPYNSVLLCNRAACRSKLGQLEKAVEDCTAALNLRPSYTKARLRRADCNAKLERWEASIGDYEILLKETPEDEEVNRALSEARVQLKKQRRG 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03383 592 MobiDBLite consensus disorder prediction 61 119 - -
Trre5g03383 592 SUPERFAMILY TPR-like 237 459 IPR011990 GO:0005515
Trre5g03383 592 Gene3D Tetratricopeptide repeat domain 235 591 IPR011990 GO:0005515
Trre5g03383 592 Pfam Tetratricopeptide repeat 494 526 - -
Trre5g03383 592 MobiDBLite consensus disorder prediction 1 123 - -
Trre5g03383 592 MobiDBLite consensus disorder prediction 17 45 - -
Trre5g03383 592 SMART tpr_5 539 572 IPR019734 GO:0005515
Trre5g03383 592 SMART tpr_5 237 270 IPR019734 GO:0005515
Trre5g03383 592 SMART tpr_5 425 458 IPR019734 GO:0005515
Trre5g03383 592 SMART tpr_5 305 338 IPR019734 GO:0005515
Trre5g03383 592 SMART tpr_5 471 504 IPR019734 GO:0005515
Trre5g03383 592 SMART tpr_5 505 538 IPR019734 GO:0005515
Trre5g03383 592 SMART tpr_5 271 304 IPR019734 GO:0005515
Trre5g03383 592 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 7 591 IPR044534 -
Trre5g03383 592 SUPERFAMILY TPR-like 476 589 IPR011990 GO:0005515
Trre5g03383 592 Pfam Tetratricopeptide repeat 244 303 - -
Trre5g03383 592 MobiDBLite consensus disorder prediction 204 225 - -
Trre5g03383 592 ProSiteProfiles TPR repeat profile. 237 270 IPR019734 GO:0005515
Trre5g03383 592 ProSiteProfiles TPR repeat profile. 425 458 IPR019734 GO:0005515
Trre5g03383 592 Pfam Tetratricopeptide repeat 307 337 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03383 Trre-Chr5 30407970 30410508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03383 168 334 Glycosyltransferase AT3G11540 26.816 3.18e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03383 - - lang:109326248 737.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03383 5 30407970 30410508 Trre5g03383 5 30407970 30410508 ECH