Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03374 ATGCCTTCCCTTCAGCTGTTGAAACTAACTCGGCATGGCCAGAGTTTTCTGGCTTCAAGGAGGAAAGCCATACTACTTACATCCGGTATCTTAATTGCTGGCGGAACAGCTGCATATATGCAATCAAGGTTTAGAGTTAATAAACATGATTTATTTGGCAATTGCAATGAGCAAAGCAATGATAAAGAAGTAACAAAGGAGGAAGTTAGGAATGACTCTACTGCACCAAAAAATAAACAAAAGAAAGGGGGCTTGAAATCACTTAAAGTCCTCACTGCAATTCTTCTATCCGAGATGGGTCAATTAGGTGTGAAGAATCTTTTATCTTTAGTTGCCACAGTGGTGCTGCGAACTGCTTTGAGCAACAGGTTAGCTAAAGTGCAAGGCTTCCTATTTCGTGCTGCTTTTCTTCGGCGTGCACCATTGTTTTTTCGGTTAATTTCAGAAAATATTATTCTGTGCTTCCTCTTGTCAACTATTCATTCTACATCAAAGTATATAACAGGCACTCTGAGTCTACATTTCAGAAAAATATTGACAAAACTTATCCATTCCCACTATTTTGAGAACATGGTATATTACAAAATATCACATGTCGATGGTCGGATAACAAACCCAGAGCAAAGAATTGCTAGTGATGTACCAAAATTCTGTTCAGAGTTGAGTGAAATTGTTCAAGATGATCTAACAGCAGTGACTGATGGACTTCTATATACTTGGCGACTGTGTTCATATGCTAGCCCAAAATATGTCTTCTGGATATTGGCCTATGTGCTTGGAGCTGGGGCTGCGATCAGAAACTTCTCTCCTTCGTTTGGGAAACTTATGTCCAAAGAACAGCAACTGGAAGGAGAGTATCGACAGCTTCACTCACGATTAAGGACTCACTCAGAAAGTATAGCATTTTATGGTGGAGAGAGGAGAGAAGAATCTCATATTCAACAGAAATTTAAAACCTTGGTTGGGCACATGAGTAGAGTGCTACACGACCATTGGTGGTTTGGCATGATTCAGGACTTTCTGTTGAAATACCTTGGTGCAACTTTTGCTGTTATTTTGATTATTGAACCTTTCTTTTCTGGTCATCTAAGGCCGGACAGTTCAACTTTAGGGCGTGCCGAGATGTTAAGCAATCTAAGATATCACACGAGTGTCATAATTTCCTTATTTCAGTCTCTAGGAACTCTTTCTATTAGTGCAAGAAGGCTCAATCGTCTTAGTGGGTATGCTGATCGCATTTATGAATTAATGGCTGTATCAAGGGAGCTAAGTTTGGTGGATGAGAAATCATCCCTGCAAAGAAATGGAAGTAGAAATTGCATAAGCGAAGCTAACTACATTGAATTTTCTAATGTCAAGGTCGTGACCCCCACTGGTAATGTCTTGGTGGATGATCTGACTCTCAGGGTTGAGCCAGGATCTAATCTTCTGATTACAGGTCCAAATGGAAGTGGAAAAAGCTCGCTTTTTCGGGTTTTAGGCGGTCTTTGGCCATTGATATCTGGACATATTGTGAAACCTGGTATTGGCTCTGATCTTAATAAGGAGATTTTCTATGTGCCTCAAAGACCGTACACTGCTGTGGGAACACTTCGCGATCAGTTGATTTATCCTCTTACTGTCAATCAAGAGGTTGAACCGCTCACAAATCATGGGATGGTGGAGCTATTGAAAAATGTTGACCTTGAATACCTATTGGACCGTTACCCGCCTGAAAAGGAAGTAAACTGGGGCGATGAACTTTCATTGGGTGAGCAACAGAGATTGGGCATGGCTAGACTTTTCTACCACAAACCTAAATTTGCAATTCTTGATGAATGCACAAGTGCTGTCACTACTGACATGGAAGAACGATTTTGTGCTAAAGTTCGGGCCATGGGAACATCATGCATTACCATATCACATCGTCCAGCGTTGGTTGCATTCCATGATGTGGTTTTATCCTTAGATGGTGAAGGTGGATGGAGTGTTCATTATAGAAGGGAGGACTCTTCTACTGAAATGGGGATTGATACAATGAAGGCGTCAGAAACAAAACGACAGAATGATGCAAAAGCAGTTCAACGAGCATTTGCCATGAATAAAAAGGACTCTGCATTCTCAAATTCAAAGGCAGAGTCGTATATTGCAGATGTGATACATTCATCCCCATCTACTAATCATACTACTTTGCCATCTACTGTTCCCCAACTTCGTGGTAATACAAGGATATTGCCACTGAGAGTAGCCGCCATGTGCAAAGTATTGGTACCCACTGTATTTGATAAACAAGGCGCACAACTGCTTGCCGTTGCCCTTCTTGTTGTTTCAAGAACATGGGTCTCAGATCGTATTGCATCTCTAAATGGTACCACTGTGAAGTTTGTTTTGGAGCAGGATAAAGTTGCCTTTATTCGTTTAATTGGTATAAGTGTACTTCAAAGTGCCGCATCTTCTTTCATTGCACCTTCTATAAGACATTTGACCGCACGGCTGGCCCTTGGGTGGCGGATTCGTCTGACACAACATCTACTCAAGAACTATTTGAGAAGCAATGTGTTCTACAAGGTCTTCCACATGGCAAGCAAAAGTGTTGATGCAGATCAGAGGATAACTCAAGATTTGGAGAAGTTAACAACAGACTTGTCTGGATTGGTAACTGGACTGGTAAAGCCATCTGTAGATATTTTGTGGTTCACATGGAGAATGAAGCTGTTAACTGGTCAAAGGGGAGTTGCCATCCTCTATGTTTACATGTTACTTGGCCTCGGGTTTTTAAGAGCTGTTACTCCTGATTTTGGTGATTTGATAAGCCAAGAACAACAACTTGAAGGAATTTTTAGGTTCATGCATGAAAGACTCTGTACTCATGCTGAATCCGTTGCTTTCTTTGGAGGTGGTGCTCGAGAAAAAGCTATGGTTGAATCAAGATTCAGCGACCTTCTCACACACTCCCAGTATCTTCTGAGAAAGAAGTGGCTGTTTGGTATATTAGACGATTTCATCACAAAACAACTACCTCATAATGTAACTTGGTTGCTCAGCTTGTTGTATGCTATGGAACACAAAGGAGACCGTGCAGCGATAAGTACCCAGGGTGAGCTGGCACATGCATTGAGGTTCTTAGCATCTGTCGTTTCTCAAAGCTTTTTAGCTTTCGGAGACATTCTTGAATTAAATAGGAAGCTTGTAGAGCTTTCTGGTGGTATTAATCGGATTTTTGAACTTGAAGAGCTGCTGGATGCAGCACAGTCTGGGGAATTCATCAATGGCGGTGCTATATCTGCAGTGACGGATTATCATTCTAAAGATGTTATTTCTTTTTCTAAGGTTAATATTGTTACCCCTACTCAGAAAATGTTGGCCAGGGAGTTGACATGTGATGTTGAGCTTGGGAGAAGCCTGCTTGTTACTGGTCCAAATGGAAGCGGGAAAAGTTCCATTTTCAGAGTTCTTCGAGGACTTTGGCCAATTGCAAGTGGAAAATTCTCTAGACCATCTGAAGATGTGGATCTAGATGCTGGATCAGGTTGTGGCATCTTCTATGTTCCTCAACGGCCGTATACATGCCTGGGAACATTGAGGGATCAAATTATATACCCTCTATCCCGCGAGGAAGCAGAGTTTAGAGCATTGAAGATTTATGGAAAAGGTGAAAAACATCCTGACACTGTAAAGTTGTTGGATAAGCACTTGGAAAGTATCCTAGAGAATGTTCGATTGAATTATCTTCTAGAAAGGGATACAAAGGGCTGGGATGCAAATGTAAATTGGGAAGACACTCTATCTCTTGGAGAACAGCAGAGATTAGGCATGGCACGCTTGTTCTTCCATAAGCCTAAATTTGGTATCTTGGACGAGTGTACCAATGCAACAAGTGTTGACGTGGAAGAACACCTATATGGGCTAGCAAAGGAAATGGAAATCACATTTATTACTTCTTCACAACGCCCTGCTTTAATACCATTTCATTCCATGGAATTGCGGCTGATTGATGGTGAGGGTAATTGGCAACTCCGTTCGATCAAGCAATGA 4014 0.4148 MPSLQLLKLTRHGQSFLASRRKAILLTSGILIAGGTAAYMQSRFRVNKHDLFGNCNEQSNDKEVTKEEVRNDSTAPKNKQKKGGLKSLKVLTAILLSEMGQLGVKNLLSLVATVVLRTALSNRLAKVQGFLFRAAFLRRAPLFFRLISENIILCFLLSTIHSTSKYITGTLSLHFRKILTKLIHSHYFENMVYYKISHVDGRITNPEQRIASDVPKFCSELSEIVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGAAIRNFSPSFGKLMSKEQQLEGEYRQLHSRLRTHSESIAFYGGERREESHIQQKFKTLVGHMSRVLHDHWWFGMIQDFLLKYLGATFAVILIIEPFFSGHLRPDSSTLGRAEMLSNLRYHTSVIISLFQSLGTLSISARRLNRLSGYADRIYELMAVSRELSLVDEKSSLQRNGSRNCISEANYIEFSNVKVVTPTGNVLVDDLTLRVEPGSNLLITGPNGSGKSSLFRVLGGLWPLISGHIVKPGIGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTVNQEVEPLTNHGMVELLKNVDLEYLLDRYPPEKEVNWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHYRREDSSTEMGIDTMKASETKRQNDAKAVQRAFAMNKKDSAFSNSKAESYIADVIHSSPSTNHTTLPSTVPQLRGNTRILPLRVAAMCKVLVPTVFDKQGAQLLAVALLVVSRTWVSDRIASLNGTTVKFVLEQDKVAFIRLIGISVLQSAASSFIAPSIRHLTARLALGWRIRLTQHLLKNYLRSNVFYKVFHMASKSVDADQRITQDLEKLTTDLSGLVTGLVKPSVDILWFTWRMKLLTGQRGVAILYVYMLLGLGFLRAVTPDFGDLISQEQQLEGIFRFMHERLCTHAESVAFFGGGAREKAMVESRFSDLLTHSQYLLRKKWLFGILDDFITKQLPHNVTWLLSLLYAMEHKGDRAAISTQGELAHALRFLASVVSQSFLAFGDILELNRKLVELSGGINRIFELEELLDAAQSGEFINGGAISAVTDYHSKDVISFSKVNIVTPTQKMLARELTCDVELGRSLLVTGPNGSGKSSIFRVLRGLWPIASGKFSRPSEDVDLDAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAEFRALKIYGKGEKHPDTVKLLDKHLESILENVRLNYLLERDTKGWDANVNWEDTLSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEHLYGLAKEMEITFITSSQRPALIPFHSMELRLIDGEGNWQLRSIKQ 1337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03374 1337 CDD ABCD_peroxisomal_ALDP 1099 1330 - -
Trre5g03374 1337 Pfam ABC transporter 464 609 IPR003439 GO:0005524
Trre5g03374 1337 SUPERFAMILY ABC transporter transmembrane region 143 417 IPR036640 GO:0005524|GO:0016020
Trre5g03374 1337 MobiDBLite consensus disorder prediction 62 79 - -
Trre5g03374 1337 CDD ABCD_peroxisomal_ALDP 447 655 - -
Trre5g03374 1337 ProSitePatterns ABC transporters family signature. 581 595 IPR017871 GO:0005524|GO:0016887
Trre5g03374 1337 Gene3D - 1091 1328 IPR027417 -
Trre5g03374 1337 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1093 1326 IPR027417 -
Trre5g03374 1337 SMART AAA_5 1124 1336 IPR003593 GO:0016887
Trre5g03374 1337 SMART AAA_5 472 651 IPR003593 GO:0016887
Trre5g03374 1337 SUPERFAMILY ABC transporter transmembrane region 761 1068 IPR036640 GO:0005524|GO:0016020
Trre5g03374 1337 MobiDBLite consensus disorder prediction 62 81 - -
Trre5g03374 1337 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 444 651 IPR027417 -
Trre5g03374 1337 ProSitePatterns ABC transporters family signature. 1255 1269 IPR017871 GO:0005524|GO:0016887
Trre5g03374 1337 Gene3D ABC transporter type 1, transmembrane domain 98 418 IPR036640 GO:0005524|GO:0016020
Trre5g03374 1337 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 676 1333 - -
Trre5g03374 1337 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 447 678 IPR003439 GO:0005524
Trre5g03374 1337 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 106 341 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre5g03374 1337 Pfam ABC transporter transmembrane region 2 746 1011 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre5g03374 1337 Pfam ABC transporter transmembrane region 2 91 359 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre5g03374 1337 Pfam ABC transporter 1117 1283 IPR003439 GO:0005524
Trre5g03374 1337 Gene3D - 434 710 IPR027417 -
Trre5g03374 1337 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1093 1335 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03374 Trre-Chr5 30275666 30286563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03374 1 1337 Acyl Lipid Metabolism Gene Families AT4G39850 77.852 0.0 2143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03374 K25819 - gmx:100813765 2374.36