Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03347 ATGGAACAGCTGGGCCGCTACAAGAAGCTGTCATACCGTGTGGTCTTTCCCCTTGAACTCAGGTTGAGCGATACAGATGAAGAAGCAGATATTGAGTATTCTCTATTTGCAGTAGTTGTCCATGTTGGGAGTGGGCCCAACCACGGGCATTATGTTTGCCTTGTAAAAAACCATAACCACTGGTTATGTTTTGATGACGAAACTGTCGAGGCCATTGATGAATCTTCTGTTCAGACATTCTTTGGGTCAACACAAGACTTCAACAATAATACAGACCATGGTTACATTTTGTTCTATGAGAGCATTAACAGAAACTAG 318 0.4245 MEQLGRYKKLSYRVVFPLELRLSDTDEEADIEYSLFAVVVHVGSGPNHGHYVCLVKNHNHWLCFDDETVEAIDESSVQTFFGSTQDFNNNTDHGYILFYESINRN 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03347 105 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1 102 IPR028889 -
Trre5g03347 105 Pfam Ubiquitin carboxyl-terminal hydrolase 7 99 IPR001394 GO:0004843|GO:0016579
Trre5g03347 105 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 33 51 IPR018200 GO:0004843|GO:0006511
Trre5g03347 105 SUPERFAMILY Cysteine proteinases 4 101 IPR038765 -
Trre5g03347 105 Gene3D Cysteine proteinases 1 101 - -
Trre5g03347 105 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03347 Trre-Chr5 30099388 30099705 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03347 K11842 - gmx:100305765 187.963