Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03309 ATGACATCTTCAGTAATTGAAGGTGGACACGATGATGGTAGTAAAAATGAACCGTCGGATTTGATAGGGGAAAAAATGAATCCGACGGTTGTAAACCTTTCACTTCCTAATGAAACATTCTTAAAAGCAGCAATTTCTCTCAAGGACGAGGTGGTGGAGATGAGTTGGAAACGGCGAGAAGTGGTTGATCCGACGGTGTATACGGGTTTGCTTGGGACGGCGTTCACTTGCCTGAGATCGTACGAGGTTACCGGTTGCCGTGAGGACTTGGTGTTATGTTCGGAGATCATTCACACATGTGCCACTGCTGCACGTGCCTCCCTCAGACACGTGACTTTTTTGTGTGGTAGAGGAGGCGTATACGCGCTTGGAGCTGTCGTTGCTAATTACATGGGGGATCTCCAAAAACGTGACCTGTTTTTGGGTCTATTCATTGAAGTGGCAAAAGAGGAAGCCCTGCCTATTGGACCCGAGGAAGGCGGTTTTGGAATGTCATATGAACTTCTATATGGACGAGCCGGATTTTTATGGGCTGCATTATTCGTAAACAAGCACCTCGGAGATGATACAGTGCCCAAAGACATCCTAATGCCTATTATTGATGCAGTATTGGCTGGCGGTAGAGCAGGAGCGTCTGATATTAAAGACTGTCCATTGATGTATCGATGGCACGGAACTAGGTACTTGGGTGCTGCAAATGGTCTTGCTGGTATTCTTCATGTGCTCCTTCATTTTCCACTTCCAAGTGAAGATGCTGAGGATGTCAAGGGAACTTTGAGATATTTGATAAGTAAAAGGTTCCCTCATAGTGGAAATTACCCCTCAAGTGAAGGGAATCCAAGAGATAAGTTAGTGCAGTGGAGTCATGGTGCAACTGGGATGGCCATTACATTGTCTAAAGCAGCACAGGTTTTTCCAAATGACAGGGAATTACGAGATGCTGCAATAGAAGCAGGGGAAGTTGTATGGAAAAGTGGATTGGTGAAGAAAGTGGGACTTGCTGATGGAATATCTGGAAATGCCTATGCTTTTCTTTCACTATACAAACTAACAAAAGATAGTATATATGAAGAGAGAGCAAAATCATTCTCTTCTTTCTTGTATGATAATGCTAGAGCTCTTGCAGTTGAAGGGCAAGATCTTACTGGTTGCAATGGTTACTCTCTCTTCCATGGACTTGCTGGGACAGCATGTCTTTGGTTTGATTTGATTGCACCTGATAAATCTAGGTTCCCTGGATATGAATTATAG 1251 0.4412 MTSSVIEGGHDDGSKNEPSDLIGEKMNPTVVNLSLPNETFLKAAISLKDEVVEMSWKRREVVDPTVYTGLLGTAFTCLRSYEVTGCREDLVLCSEIIHTCATAARASLRHVTFLCGRGGVYALGAVVANYMGDLQKRDLFLGLFIEVAKEEALPIGPEEGGFGMSYELLYGRAGFLWAALFVNKHLGDDTVPKDILMPIIDAVLAGGRAGASDIKDCPLMYRWHGTRYLGAANGLAGILHVLLHFPLPSEDAEDVKGTLRYLISKRFPHSGNYPSSEGNPRDKLVQWSHGATGMAITLSKAAQVFPNDRELRDAAIEAGEVVWKSGLVKKVGLADGISGNAYAFLSLYKLTKDSIYEERAKSFSSFLYDNARALAVEGQDLTGCNGYSLFHGLAGTACLWFDLIAPDKSRFPGYEL 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03309 416 PRINTS LanC-like protein superfamily signature 166 181 IPR007822 GO:0031179
Trre5g03309 416 PRINTS LanC-like protein superfamily signature 331 344 IPR007822 GO:0031179
Trre5g03309 416 PRINTS LanC-like protein superfamily signature 386 403 IPR007822 GO:0031179
Trre5g03309 416 PRINTS LanC-like protein superfamily signature 63 81 IPR007822 GO:0031179
Trre5g03309 416 PRINTS LanC-like protein superfamily signature 228 244 IPR007822 GO:0031179
Trre5g03309 416 PRINTS LanC-like protein superfamily signature 284 304 IPR007822 GO:0031179
Trre5g03309 416 CDD euk_LANCL 66 412 - -
Trre5g03309 416 MobiDBLite consensus disorder prediction 1 22 - -
Trre5g03309 416 SUPERFAMILY LanC-like 43 416 - -
Trre5g03309 416 PRINTS Eukaryotic LanC-like protein family signature 196 211 IPR020464 -
Trre5g03309 416 PRINTS Eukaryotic LanC-like protein family signature 264 279 IPR020464 -
Trre5g03309 416 PRINTS Eukaryotic LanC-like protein family signature 402 416 IPR020464 -
Trre5g03309 416 PRINTS Eukaryotic LanC-like protein family signature 302 323 IPR020464 -
Trre5g03309 416 Gene3D - 15 416 IPR012341 GO:0005975
Trre5g03309 416 Pfam Lanthionine synthetase C-like protein 61 416 IPR007822 GO:0031179
Trre5g03309 416 PANTHER LANC-LIKE PROTEIN 34 416 - -
Trre5g03309 416 SMART LANC_like_2 60 416 IPR007822 GO:0031179
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03309 Trre-Chr5 29670766 29680393 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03309 - - gmx:100785406 725.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03309 5 29670766 29680393 Trre5g03309 5 29670766 29680393 ECH